Incorporated Andrew n's AI2 production protocol adjustments. Added
capability for planktonics to become a single different species as they
join biofilm, specifying this new species in the protocol file.
Note: many parameters are still hard-coded (not read in from protocol
file) for now
Added Andrew N's AI2 protocols. Planktonic joiners now become a new
species defined in protocol file

Note: many parameters still hard-coded. Will be read in from protocol
file in future.
Merge branch 'master' of https://github.com/codicorn/iDynoMiCS.git

Conflicts:
	bin/simulator/Planktonic/PlanktonicManager.class