started on cmake integration and git submodule of samtools
small change to remove redundant cmake include
small changes trying to get a link to samtools to work with CMake. Still unsuccessful at that
initial success on cmake, want mike to test and finish it
Put the executables in the bin dir
removed superflous samtools cmake modules; added configure + Makefile to run cmake; added empty build dir
Merge branch 'feature/cmake' of github.com:itmat/pre-pade into feature/cmake
Move out-of-source macro to the top
Working on readme
Use markdown numbered list syntax
Add install target
Working on README
Add some steps to the install instructions
Add some install notes
Adding tests
Run tests
removed configure file to avoid confusion
Merge branch 'feature/cmake' into develop
small edit to README
Merge branch 'develop' of https://github.com/itmat/pre-pade into develop