[FIX] Linker problem in mason2.

git-svn-id: http://svn.seqan.de/seqan/trunk@14365 e6417c60-b987-48fd-844e-b20f0fcc1017
[FIX] Warning in ngs_roi.

git-svn-id: http://svn.seqan.de/seqan/trunk@14366 e6417c60-b987-48fd-844e-b20f0fcc1017
[FIX] Flooring to 4 digits in roi_builder.

git-svn-id: http://svn.seqan.de/seqan/trunk@14367 e6417c60-b987-48fd-844e-b20f0fcc1017
[FIX] Updating test data for bam2roi.

git-svn-id: http://svn.seqan.de/seqan/trunk@14368 e6417c60-b987-48fd-844e-b20f0fcc1017
[FIX] Towards ngs_roi in Galaxy.

git-svn-id: http://svn.seqan.de/seqan/trunk@14369 e6417c60-b987-48fd-844e-b20f0fcc1017
[FIX] Manuel fixed the a bug in the dox system.

git-svn-id: http://svn.seqan.de/seqan/trunk@14370 e6417c60-b987-48fd-844e-b20f0fcc1017
[FIX] Fixing ngs_roi for Galaxy.

git-svn-id: http://svn.seqan.de/seqan/trunk@14371 e6417c60-b987-48fd-844e-b20f0fcc1017
[DOC] Formatting in @deprecated message in dox builder.

git-svn-id: http://svn.seqan.de/seqan/trunk@14372 e6417c60-b987-48fd-844e-b20f0fcc1017
[DOC] Fix to dox typedef.

git-svn-id: http://svn.seqan.de/seqan/trunk@14373 e6417c60-b987-48fd-844e-b20f0fcc1017
[FIX] Fixing relative path in stream.h again.

git-svn-id: http://svn.seqan.de/seqan/trunk@14374 e6417c60-b987-48fd-844e-b20f0fcc1017
[DOC] Dox documentation for misc/edit_environment.h.


git-svn-id: http://svn.seqan.de/seqan/trunk@14375 e6417c60-b987-48fd-844e-b20f0fcc1017
[DOC] Dox documentation for misc/misc_accumulators.h.


git-svn-id: http://svn.seqan.de/seqan/trunk@14376 e6417c60-b987-48fd-844e-b20f0fcc1017
first check-in, new packed string works again, uses Tuple as inner type

git-svn-id: http://svn.seqan.de/seqan/trunk@14377 e6417c60-b987-48fd-844e-b20f0fcc1017
finished new packed string with faster array moves

[FEATURE] added fast arrayCopy variants for packed string

[NOP] .gitignore added

[FIX] fixed wrong shift size (there is still a bug)

[FIX] fixed arrayCopyBackward (arrayCopyForward is still buggy)

[FIX] fast arrayCopyForward()/..Backward() work and are tested, added a fast arrayFill() and tests (no bugs)

[FIX] made arrayFill more readable

git-svn-id: http://svn.seqan.de/seqan/trunk@14378 e6417c60-b987-48fd-844e-b20f0fcc1017
alternative packed string where size is stored inside host string

[FIX] finished to move the length into the host string -> now the packed string has only one member (the host string) which could be a persistent mmap string

[FIX] added missing swap and reserve in constructor

[FIX] repaired some value/reference bugs in the sequence test v2 and added assign for Proxy

[FIX] signed to unsigned in reserve

git-svn-id: http://svn.seqan.de/seqan/trunk@14379 e6417c60-b987-48fd-844e-b20f0fcc1017
[DOC] More dox documentation for misc.

git-svn-id: http://svn.seqan.de/seqan/trunk@14380 e6417c60-b987-48fd-844e-b20f0fcc1017