Merge pull request #7 from PatrickDeelen/master

Small merge ref impute2 update
Merge pull request #8 from PatrickDeelen/master

Impute2 merge ref small updates
Fixed typos in github repo URLs in README.md
Added new GAF and de-novo assembly workflows + updated gitignore.
Merge pull request #10 from pneerincx/master

Added new GAF and de-novo assembly workflows + updated gitignore.
Changes to impute2 pipeline, put/getFile added.
added empty (worksheet) parameters for db version
Merge branch 'master' of github.com:molgenis/molgenis-pipelines
Small modification in impute2Imputation.ftl
Merge pull request #11 from freerkvandijk/master

Bugfix in impute2 protocol
Fixed bug in impute2Imputation.ftl
Merge pull request #12 from freerkvandijk/master

Bugfix in impute2Imputation.ftl
Fixed bug in impute2 pipeline. Added first version of shapeIt phasing pipeline.
Merge pull request #13 from freerkvandijk/master

Fixed bug in imputation pipeline, added first version of phasing pipeline.
Test worksheet