aligner.{hh,cc}, scoring_matrix.{hh,cc} kmer.{hh,cc} have all been combined
into/replaced by read_aligner.{cc,hh}


On Wed, Aug 28, 2013 at 11:54 AM, mr-c <notifications@github.com> wrote:

> In lib/Makefile:
>
> > @@ -21,7 +21,7 @@ AUX_PROGS=#ht-diff
> >  CORE_OBJS= error.o khmer_config.o thread_id_map.o trace_logger.o perf_metrics.o ktable.o
> >  PARSERS_OBJS= read_parsers.o
> >
> > -all: $(ZLIB_OBJS) $(BZIP2_OBJS) $(CORE_OBJS) $(PARSERS_OBJS) hashtable.o hashbits.o subset.o counting.o test aligner.o scoringmatrix.o node.o kmer.o
> > +all: $(ZLIB_OBJS) $(BZIP2_OBJS) $(CORE_OBJS) $(PARSERS_OBJS) hashtable.o hashbits.o subset.o counting.o test read_aligner.o
>
> What's the thinking for removing the aligner.o scoringmatrix.o node.o
> kmer.o targets from all?
>
> —
> Reply to this email directly or view it on GitHub<https://github.com/ged-lab/khmer/pull/129/files#r6037301>
> .
>