skip bwamem and bwasw alignment for bamqc for now
Update version regex in GMT/Annotate/LookupConservationScore
CHANGELOG Annotation files with headers are now available in somatic variation pipeline
Add Annovar wrapper tool
Add tool to append columns to an annotation file by matching up the chromosome coordinates
Fix annovar script path
Add annovar option to annotate with a bed file
Improve efficiency by only tracking additional columns for variants of interest
Create Annovar command tree
Add status messages
First try at annotating regulatory variants in somatic variation pipeline
Avoid writing the huge summary to make it faster
Change annovar output path
Annovar wrapper allows you to annotate with multiple bed files
Add another thing to annotate
Fix some bugs
Merge annotation tool
Annotate with annovar for all tiers
Attempt to translate gene names to a consistant system
Allow more than one entry for maf files with different gene calls