Exome pipeline v5

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Merge

Hg: changed csv2db.py
exome pipeline v6
Exome pipeline v6
fixed goslim bug
fixed goslim bug
Exome pipeline report update

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fixed goslim bug
remove deleted files
Merge with Andreas
merged with David
added pipeline_readqc
changed ini files to new annotations location
Merge with Andreas
Merge with Andreas
added chain2stats.py
merge with Andreas

Hg: --
 merge with Andreas

Hg: --
gtf2alleles.py
merged with stephen's changes