cleaning up IBFE implementation

git-svn-id: https://ibamr.googlecode.com/svn/branches/boyceg@3504 d09065f7-430b-272c-15e1-d58225cc4d83
cleaning up IBFE implementation

git-svn-id: https://ibamr.googlecode.com/svn/branches/boyceg@3505 d09065f7-430b-272c-15e1-d58225cc4d83
minor formatting change to IBHierarchyIntegrator.C

git-svn-id: https://ibamr.googlecode.com/svn/branches/boyceg@3506 d09065f7-430b-272c-15e1-d58225cc4d83
partial implementation of constraint support for IBMethod

git-svn-id: https://ibamr.googlecode.com/svn/branches/boyceg@3507 d09065f7-430b-272c-15e1-d58225cc4d83
reverting changes from r3507

git-svn-id: https://ibamr.googlecode.com/svn/branches/boyceg@3508 d09065f7-430b-272c-15e1-d58225cc4d83
updating documentation for Stokes preconditioner

git-svn-id: https://ibamr.googlecode.com/svn/branches/boyceg@3509 d09065f7-430b-272c-15e1-d58225cc4d83
eliminated several blitz++ related compiler warnings

git-svn-id: https://ibamr.googlecode.com/svn/branches/boyceg@3510 d09065f7-430b-272c-15e1-d58225cc4d83
updates to IBFE constraint method

git-svn-id: https://ibamr.googlecode.com/svn/branches/boyceg@3511 d09065f7-430b-272c-15e1-d58225cc4d83
updating all file names in IBTK to use Google coding standards (XXX.C ---> XXX.cpp; XXX.I ---> XXX-inl.h) in order to leverage include-what-you-use (IWYU); most #includes and forward declarations have been set using IWYU; IWYU pragmas added to many files

git-svn-id: https://ibamr.googlecode.com/svn/branches/boyceg@3512 d09065f7-430b-272c-15e1-d58225cc4d83
updated all IBAMR files to use Google coding standards (XXX.C ---> XXX.cpp; XXX.I ---> XXX-inl.h) in order to leverage include-what-you-use (IWYU); most #includes and forward declarations have been set using IWYU; IWYU pragmas most #includes and forward declarations have been set using IWYU; IWYU pragmas

git-svn-id: https://ibamr.googlecode.com/svn/branches/boyceg@3513 d09065f7-430b-272c-15e1-d58225cc4d83
updating file name comments in IBTK

git-svn-id: https://ibamr.googlecode.com/svn/branches/boyceg@3514 d09065f7-430b-272c-15e1-d58225cc4d83
updates to examples

git-svn-id: https://ibamr.googlecode.com/svn/branches/boyceg@3515 d09065f7-430b-272c-15e1-d58225cc4d83
creating temporary ibamr-dev branch that includes updates to enable IBAMR to leverage IWYU

git-svn-id: https://ibamr.googlecode.com/svn/branches/ibamr-dev-IWYU@3516 d09065f7-430b-272c-15e1-d58225cc4d83
renaming all remaining XXX.C files XXX.cpp

git-svn-id: https://ibamr.googlecode.com/svn/branches/ibamr-dev-IWYU@3521 d09065f7-430b-272c-15e1-d58225cc4d83
updated Makefiles for branches/ibamr-dev-IWYU

git-svn-id: https://ibamr.googlecode.com/svn/branches/ibamr-dev-IWYU@3522 d09065f7-430b-272c-15e1-d58225cc4d83
removing illegal call to pow(int,int)

git-svn-id: https://ibamr.googlecode.com/svn/branches/ibamr-dev-IWYU@3534 d09065f7-430b-272c-15e1-d58225cc4d83
fix to enable compilation with g++ 4.2

git-svn-id: https://ibamr.googlecode.com/svn/branches/ibamr-dev-IWYU@3538 d09065f7-430b-272c-15e1-d58225cc4d83
fixing PETScNewtonKrylovSolver::setOptionsPrefix()

git-svn-id: https://ibamr.googlecode.com/svn/branches/ibamr-dev-IWYU@3540 d09065f7-430b-272c-15e1-d58225cc4d83
fixing HDF5 headers in branches/ibamr-dev-IWYU

git-svn-id: https://ibamr.googlecode.com/svn/branches/ibamr-dev-IWYU@3542 d09065f7-430b-272c-15e1-d58225cc4d83
removing spurious linker lines for libqd in branches/ibamr-dev-IWYU

git-svn-id: https://ibamr.googlecode.com/svn/branches/ibamr-dev-IWYU@3547 d09065f7-430b-272c-15e1-d58225cc4d83