initial commit
Removed junk files
Ranking finished
Added accessor for geo dict
Added a set geo method
Pertubations of Bit String Geo

Working on a pertubation of a bit string geo
enhanced the print
Added slices thickenss getter
Added an MCNPX model run
Fixed error in import
Fixed error in inp
Fixed an error in the output file name

MCNPX won't run unless it has a unique file name, so the createInputDeck
was modified to have an output name based on the genome it is
similating.
Added settors for inp and name
Wrote Pertubations

Wrote the pertbuations and added settors to the RPMModel
Ignoring MCNPXModel INP and OUT
Fixed minor compile errors

Fixed minor compile errors in the pertubations
Added input and output to createInputDeck

Previously the create input deck didn't work with setting the filename,
as the filename was reset when writing the input deck.
Fixed error in createInputDeck filenames

Fixed an error in create input deck filename where I was an idiot.
Added MCNPTools
Adding MCNPX ranking / summerizing

Adding code to summerize MCNPX like the XSDRN