turned off column sorting when writing output TSV (just for speed)
turned off column sorting when writing output TSV (just for speed)
and added some print statements to write current time at various steps
turned off column sorting when writing output TSV (just for speed)
turned off column sorting when writing output TSV (just for speed)
added print statements to write time to output
create $tumor output directory if it does not already exist
removed the pathway-level GEXP features step