Add bower to project
Use the minified bootstrap.js file.

It's already in the project.
Use the SciMed fork of Amnesia

meh's repository has a bug in it. Change this back to his once he accepts
my pull request or fixes the bug.
Add CoffeeScript support

We also started to move our JavaScript over to CoffeeScript.
Update resource index helpers

We refactored this to clean up some conditionals and make the code cleaner.