Documentation improvements: add more information on motivation, add user page, rework README to be more concise
Documentation improvements: add more information on motivation, add user page, rework README to be more concise
Provide documentation on JVM memory settings. Thanks to @brentp
Work towards increased Galaxy support for configuring reference file locations: allow custom indices for novoalign and bowtie2, falling back to old remapping path approach. Read galaxy INI file for configuration options. #63
Merge
Added @scilifelab as a user of the pipeline