Revert "Revert "Adjust kuzumoto_et_al_2007_2.5Hz.Anoxya.em to the new Cytoplasm model""

This reverts commit 6588ad87fa4946e7d54b366bc4acaf0ea8f97686.
Revert "Revert "himeno_et_al_2008_steadystate.em updated""

This reverts commit a3357bb04c3740dd510167acc2c62936efdb9b97.
Revert "Revert "Atrium_model.em updated""

This reverts commit bf3190dec5b00a07a943d9a2cde54ffc38581a93.
Revert "Revert "Jedit X Coloring profiles for EM and C++""

This reverts commit 056fccb016dd208aa263b0e960ba3f207529428a.