Modify refreshing to be controllable when indexing something the user
asked for. Refs EMP-213.
Pegdown version bump and scaladoc.
Bump mysql jar version.
Remove extra paras around markdown content. Fixes EMP-214
Version bump, refs EMP-209.
Fix misattribution of comments when indexed. Refs EMP-215
Adjust text of commit comments, refs EMP-210
Make comments and commits addressable via anchor. Refs EMP-216
Make timeline events link to their comments & comments, if applicable.
Refs EMP-217
Merge branch 'master' into EMP-209-0.0.23