Provide flexible memory adjustment for GATK runs during initial alignment post-processing steps: maximize memory usage for multicore processes and avoid memory issues for highly parallel work
Enable logging for multiprocessing/future processing running within ipython environments: create process local references to ZeroMQ logger. Move to concurrent.future for multiprocessing to improve error messages for debugging.
Avoid picking up tarballs located in snpeff data directory. Fixes #38. Clean up logging test code for multiprocessing inside ipython
Document workaround for Git when git protocol is blocked or behind proxy. Thanks to James Cuff
Small plink to VCF cleanups: handle file inputs with alternative characters and more intuitive output files
Use joblib for multicore parallelization instead of custom multiprocessing/concurrent.futures implementation. Work on #37
Use zip_safe=False to keep the installation unzipped for easier
debugging. Fixes issue #41.
Some PEP8 fixes
Merge pull request #42 from cswegger/setup_no_zip

Set installation as zip_safe=False