Fix GitRepository initialization in Rebase command
Merge remote-tracking branch 'origin/master' into auto-submods
Fix GitRepository initialization in various commands
Merge pull request #4 from sbesson/auto-submods

Fix GitRepository initialization
merge master -D org -I include -E conflict -E needs-fixes -E broken: PR 10 (Convert bash scripts to Python)
merge master -D org -I include -E conflict -E needs-fixes -E broken: PR 47 (Auto submod updating)
merge master -D org -I include -E conflict -E needs-fixes -E broken

Repository: openmicroscopy/snoopycrimecop
Already up-to-date.
Merged PRs:
  # PR 10 sbesson 'Convert bash scripts to Python'
  # PR 47 joshmoore 'Auto submod updating'
Conflicting PRs (not included):
  # PR 52 sbesson 'Filter improvement'

Generated by SCC-merge#135 (http://hudson.openmicroscopy.org.uk/job/SCC-merge/135/)