Error codes below 255
Easier configuration of the hpg-var-effect tool parallelism
--version command-line argument
SNP ID shown in GWAS application output report
gitignore: Ignored nbproject
Refactoring of function that queries for the effect of a mutation
Refactoring of functions that query for mutation and SNP phenotypes
Functions from hpg-var-effect that perform the requests to CellBase and init/free buffers moved to bioinfo-libs
Initial code to load the VCF file in the data structure
Added setting annotation
Static variables in effect_runner made local
Added khash for index files
Annotation of VCF INFO field moved to bioinfo-libs
Added the bam processing
Added pragmas for code optimization and refactoring
Refactoring of the sample_list, now the initialization is in the main while
Removed unused code
Block reading a file when it is ahead the least common merged position (improves memory usage by 100x, 2x speed-up)
Option 'entries-per-thread' removed
Added write to output file