Add dependency info to MANIFEST.MF files

  * This commit is a cherry-pick from 39c6e6a4ce2a2c4946107add7d346f09444b54a5
  * Added another cherry-pick from f234400c35bf3522d72a1d7fa66acbebc9ce5b35 to
    remove a missing dependency in MANIFEST.MF of hibernate-search
  * Update JGroups version to 3.3.0-cloudtm-SNAPSHOT
Merge branch 'big-refactoring-2012' into new-cloudtm

  * This merge brings in the refactorings to the collections and the support
    for indexed relations.
  * Eliminates the temporary implementation of indexes solely on class attributes
  * Update pom files in new modules to use -cloudtm- infix:
    * test-collections
    * test-indexes

Conflicts:
	backend-infinispan/src/main/java/pt/ist/fenixframework/backend/infinispan/InfinispanBackEnd.java
	linkedlist-domain-object/pom.xml
	parent/pom.xml