Added Huayan's latest versions of code
Update tools/bgisoap/msort.py
first new test file.
fix the problem: no max_length_short_read is set up.
fix bugs
Dec14 update from Huayan
Dec14 update from Huayan
Dec 18 update
in perl
Delete tmp files
Dec 19 Update
new changes
Merge remote-tracking branch 'galaxy-tools-bgisoap/master' into huayan

Conflicts:
	tools/bgisoap/soapdenovo.py
	tools/bgisoap/soapdenovo.xml
	tools/bgisoap/soapdenovo_config.xml
webpages
test
new changes
2nd round test by Huayan
2nd round test by Huayan
2nd round of testing, update
Merge branch 'huayan' of https://github.com/gigascience/galaxy-tools-bgisoap

Conflicts:
	build.properties
	build.xml
	galaxy/tool_config
	tooldep/bgisoap/0.1/env.sh
	tools/bgisoap/gapcloser.py
	tools/bgisoap/gapcloser.xml
	tools/bgisoap/kmerfreq.xml
	tools/bgisoap/msort.py
	tools/bgisoap/soapdenovo2_contig.py
	tools/bgisoap/soapdenovo2_map.xml
	tools/bgisoap/soapdenovo2_pregraph.py
	tools/bgisoap/soapdenovo2_scaff.py