update sprint3

1. update therps batch
2. pdf html export
3. create parameters.py & model.py for therps&agdrift
Merge remote-tracking branch 'origin/tao'

Conflicts:
	agdrift/__init__.pyc
	agdrift/agdrift_output.py
	app.yaml
	html_output.py
	iec/iec_output.py
	pdf_output.py
	pfam/pfam_output.py
	rice/Ricedb.py
	templates/01uberheader.html
	templates/04uberoutput_end.html
	templates/popup.html
	therps/therps_output.py