depreciated cmd option for old pipeline templates
Merge pull request #158 from wtangiit/master

depreciated cmd option for old pipeline templates
Merge pull request #159 from jaredbischof/master

Added code to insert job into AWE MGRAST lookup database when submitting to AWE.
Merge pull request #160 from jaredbischof/master

Typo.
Merge pull request #161 from jaredbischof/master

Minor bug fix.
Merge pull request #162 from jaredbischof/master

Added 2 files to download from Shock after AWE workflow is complete.
Merge pull request #163 from jaredbischof/master

 Created script that will be run by cron to get a list of jobs from the AWE MGRAST lookup database and submit the completed jobs to the rest of the MG-RAST pipeline.
Merge pull request #164 from jaredbischof/master

Typo
Merge pull request #165 from jaredbischof/master

Fixing permissions
Merge pull request #166 from jaredbischof/master

Fixing bugs.
Merge pull request #167 from jaredbischof/master

Added code to delete job from AWE_MGRAST lookup table after submitting the remainder of the job's pipeline to torque.
awe_genecalling.pl retaining coding .fna
add output genecalling.coding.fna in awe.template
inhibit genecalling splitting for now (since multiple output files need more handling)
Merge pull request #168 from wtangiit/master

awe_genecalling.pl retaining coding .fna
enable genecalling task splitting
Merge pull request #169 from wtangiit/master

enable genecalling task splitting for multiple outputs
awe_annotate.pl check job number specified
Merge pull request #170 from jaredbischof/master

Updates to MGRAST AWE template and addition of download file from AWE.
Merge pull request #171 from wtangiit/master

awe_annotate checking job number in cmd line argument