improve after test failed due to additional file

- Check that we got the expected number of files so it will be clearer
  if something underneath changed.
- Check that the file exists in the $temp_dir.
- Check that the file exists in the $expected_output_dir.
- Add name to the compare_ok tests.
simplify test with run_ok
remove some DRY comments
updated workflow submodule to adde3cf
updated jenkins submodule to ecb044d
updated jenkins submodule to da4770c
updated jenkins submodule to b92b92a
updated jenkins submodule to 2cf8523
Fix bug to handle ref-align models with now dbsnp build associated
Clin
Minor update to cn-view figures
Sample: add delete method to delete libraries
Subject: use bool exp to pull out undeclared attrs; set nomenclature when creating attrs
Sample Import: removed commits
Sample Import: remove _bail method
Sample Import: add ind and sample attrs to base
Sample Import: update update attrributes
Sample Import: import command generates sub commands for namespaces
Sample import: use config to add commands
Sample Import: change sample/ind attrs to names