Merge branch 'release-0.3.13'
Added mediawiki output
Added loft_parser for mediawiki support
PHP Notice fixes
Removed dependency on CodeKit app.
Disabled doxygene using new disabled flag.
Removed generation of codekit-config.json.
Added namespace aklump\loft_docs
Version bumped from  0.3.13 to 0.4
Merge branch 'release-0.4'