Merge pull request #405 from teharrison/develop

compute api: removed aith requirement
Merge pull request #406 from teharrison/develop

compute api: added better error message, fix header printing
Merge pull request #407 from teharrison/develop

removed info realted to download files no longer available. added tool to build query and download via API.
first figure
add more examples
more examples
Edited Makefile to produce api documentation for MG-RAST and KBase on every make.
Some edits to api.cgi so that url's appear correctly in return structures.
Edited documentation generator script to accept a site name as a command line option.
add abundance_matrix.pl
Merge pull request #408 from jaredbischof/develop

Edits to make API url's show up correctly in return structures and some fixes to API documentation.
add example
Merge branch 'develop' of github.com:MG-RAST/MG-RAST into develop
Merge pull request #410 from wgerlach/develop

api example scripts
Added two python examples
Merge branch 'develop' of http://github.com/MG-RAST/MG-RAST into develop
kevin created a directory for R based API examples
added scripts and placeholders for R based API examples
add couple simple r scripts
more comments for python example