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Merge branch 'master' of github.com:hoangtn/CNVrd2

Conflicts:
	CNVrd2.pdf
	CNVrd2/DESCRIPTION
	CNVrd2/NAMESPACE
	CNVrd2/R/AllClasses.R
	CNVrd2/R/calculateLDSNPandCNV.R
	CNVrd2/R/countReadInWindow.R
	CNVrd2/R/emnormalCNV.R
	CNVrd2/R/groupBayesianCNVs.R
	CNVrd2/R/groupCNVs.R
	CNVrd2/R/identifyPolymorphicRegion.R
	CNVrd2/R/plotCNVrd2.R
	CNVrd2/R/plotPolymorphicRegion.R
	CNVrd2/inst/doc/CNVrd2.pdf
	CNVrd2/man/calculateLDSNPandCNV.Rd
	CNVrd2/man/ccl3l1data.Rd
	CNVrd2/man/clusteringCNVs-class.Rd
	CNVrd2/man/countReadInWindow.Rd
	CNVrd2/man/groupBayesianCNVs.Rd
	CNVrd2/man/groupCNVs.Rd
	CNVrd2/man/identifyPolymorphicRegion.Rd
	CNVrd2/man/plotPolymorphicRegion.Rd
	CNVrd2/vignettes/CNVrd2.Rnw
	CNVrd2_0.99.0.tar.gz
	using1000Genome.md
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