On Mon, Aug 26, 2013 at 06:06:38PM -0700, Ram RS wrote:
> > @@ -62,7 +74,7 @@ Assembling with Trinity
> >  
> >  Run the assembler! ::
> >  
> > -   /root/trinityrnaseq_r2013-02-25/Trinity.pl --left left.fq --right right.fq --seqType fq -JM 15G
> > +   /root/trinityrnaseq*/Trinity.pl --left left.fq --right right.fq --seqType fq -JM 15G
> 
> But will we not have to address this problem earlier? At Line 25, I think, because the cd trinityrnaseq* will open the first match, and that is a problem if we have multiple versions.

Yep.

> What if we create a symlink to the latest version that we have extracted and use that to access Trinity.pl?

Then when Trinity updates we have to update the protocol... not great.

Anyway, this will work for now.

--t
-- 
C. Titus Brown, ctb@msu.edu