Commited out GetLLM and drive test in all_test.py since they separately
on CDash
Action calc in GetLLM Modified

Action calculation from calculate kick changed.  Now three calculations
for the action are done using beta from model, beta from amp and beta from
phase.  Thresholds bbthreshold and errthreshold, set by user (-e ->
errthrehsold, -k -> bb threshold), control which bpms from measurement are
included in the action calculation.  getkick in helper no longer calls
get_beta_from_amp for action calculation but instead calls gen_kick_calc,
a new function in helper.py.
Merge branch 'master' of https://github.com/pylhc/Beta-Beat.src
Merge branch 'master' of https://github.com/pylhc/Beta-Beat.src.git
Small changes on beta and ip. Commented out GeLLM and drive tests for
nightly since there are also stand alone.
Fixed path to test_output.py in ctest file.
Removed debug prints in interaction_point.py
slight change in some values in the
getsuper test, for file chrombetay,
only at location BPM.8R1.B1

reference file updated.
Deleted obsolete files in CoreFiles

closes #14
Output file for kick modified

The output file 'getkick.out' from previous commit is now changed-> only
has action calculation for beta from model in old format, but with new
method of calculation for 2J.  There is now a separate output file
'getkickphase.out' with calculation of action from phase.  Action
calculation using beta from amplitude is no longer in any output files.

Additionally, comments added to gen_kick_calc().
Merge branch 'master' of https://github.com/pylhc/Beta-Beat.src
Columns removed from getkick.out

The "_"Res columns were removed from the output of getkick.out and
getkickphase.out.  Also 0 is the returned action if all BPMs are rejected
in a calculation.
Extracted long condition into a function and changed checking if file is empty(vimaier)
Deleted some comments and commented out code
Adapted GetLLM_valid.py to omit columns in getkick

Adapted so that the last eight columns are not printed any more since the
new version does not have these columns.
Also removed the rescaling factors.
Added outputpath to getcoupling1|2

Fixes #9
If Drive.inp is available TUNE X and TUNE Y will be read from there.
Renamed a variable and changed indentation of a comment
Inserted a check if sin(dpsi) is negative

Closes #28
Merge branch 'master' of https://github.com/pylhc/Beta-Beat.src
Added function to intersect bpms with a list of bpm_names