Merge pull request #6 from EcoForecast/master

update
Merge pull request #7 from EcoForecast/master

high level outline
Merge pull request #24 from AngelaRigden/master

Updating files
Merge pull request #7 from EcoForecast/master

Pull statespace model data from Angela
Delete output.pdf

Accidentally pushed
Better
Create Particle Filter model.
Delete .Rapp.history
Function to set ensemble size in operations script
fixed bugs in particle code and made notes on what needs to be done next
Fixed some bugs in RunJAGS.R which prevented run.SS.model from working as function call.
-Dan
Merge pull request #8 from EcoForecast/master

h
Made changes to Operations.R to include a data download/update step.
Added a function to do the data download/update called get.site.data.R.
-Dan
Added a data download/update step in Operations.R
-Dan
Merge pull request #25 from dgianotti/master

Updates to Operations.R, RunJAGS.R, make.SS.plots.R, run.SS.model.R.  Created new file, get.site.data.R.
Delete RunJAGS_detroyV1.R

This is for testing purposes only.  Not needed in Repo

-Dan
Delete output.pdf
Delete RunJAGS_detroyV1.R
Merge pull request #8 from EcoForecast/master

Add in beginings of particle filter code
Merge pull request #8 from EcoForecast/master

merge changes from Saturday meeting