Prevented segfault on print non-existant alignment

In processPhraseTable, there is an option to print alignments.
When this is selected, processPhraseTable will print the 4th
column in the phrase table, but the check for the phrase table
width only currently goes to the 3rd column. This patch makes
sure that the phrase table must have 4 columns when alignments
are being printed, and 3 otherwise.
Merge branch 'master' of github.com:neubig/mosesdecoder into check-processphrasetable-width
Merge pull request #41 from neubig/check-processphrasetable-width

Prevented segfault on print non-existant alignment string
minor debug tweak
Merge github.com:moses-smt/mosesdecoder into hieu_opt_input
Merge branch 'master' of github.com:moses-smt/mosesdecoder
Merge github.com:moses-smt/mosesdecoder into hieu_opt_input
call legacy code for confusion network input with binary pt
beautify