Initial commit to repo

The vast majority of these files are from HTML 5 BP, with a few
modifications.

* Required elements from HTML5 BP such as fav.ico and robots.txt remain
in the root.
* original documentation files were moved into doc/

*index.html contains modifications for the sake of the example.
* css/main.css has been adjusted to include project specific styling.
* js/main.js is the core rapidSeq file, containing all of the UI hooks
and app behavior