Added Holger's TDT function
Created the aTDT method for class gTrio

This method performs the allelic TDT test as implemented by Holger Schwender in the package trio.
Added Holger to author list
Updated version
First commit of the SummarizedExperiment based package.
First effort at the SNPExperiment class.
Updated vignette trioClasses
Changed class name to SNPTrioExperiment
Updated .gitignore
Updated vignette trioClasses
Added methods show, Pedigree, geno, logR, baf and compleTrios
Created PedClass and cleaned up pedigree and completeTrios methods
Cleaned up PedClass and Pedigree inconsistencies
Introduced file methods-PedClass and tried to get the show method to work correctly, but failed.
No new functionality

I had some trouble running the package at first, so I had to re-write some to get the vignette functional again.  There are some changes made to the class structure, but nothing major.  No new functionality was introduced.  Perhaps some was lost, but I don't think so.
Updated ./vignettes/.gitignore
Removed Sweave.sty from repository

My intention was to leave a copy on the local machine, but have git ignore it.
Updated vignette and removed .tex and .R files