Restructuring of the guassian filter energy.
Fixed the visualization of virtual res statistics.
Fixed the ImgHelixOrientationEnergy
Style changes.
ImgHelixEnergy efficiency improvements.
energy function changes
Changes to the ImgHelixOrientationEnergy.
Minor looping improvement.
Use KD tree for ImgHelixEnergy
timing information
Speed improvements to the ImgHelixEnergy
Use the virtual residues to compute the rmsd
Cosmetic changes in sampling.py
Sample multiple different energies simultaneously
Moved the virtual residue calculation to the model construction location.
Fixed ImgHelixEnergy
Fixed the loop reconstruction code.
Extremely minor change.
Debugging the RoughJunctinClosureEnergy.
Added plot_junction_lengths.R