Config file can be relative to JAR file path
Updating Galaxy scripts and config files.

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Update galaxy databases when building

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Command line option "-download": Automatically download databases if not already installed

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Refactor dir

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Added command line option "-dataDir" to override data_dir from config file.


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Adding Akka multi-threaded actors for Co-Evolutionary based model (this is a proof of concept only).

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Merge remote-tracking branch 'upstream'