Added /home/razor/soft/bpipe/bin:/home/razor/soft/opera/bin:/home/razor/soft/dtrx/bin:/home/razor/soft/detox/bin:/home/razor/soft/cytoscape/Cytoscape_v2.8.3:/home/razor/soft/calibre/calibre/bin:/home/razor/soft/pyicos/bin:/home/razor/soft/bpfinder/SCRIPTS:/home/razor/soft/bpfinder:/home/razor/soft/svmlight:/home/razor/soft/memeris/bin:/home/razor/soft/rnacontext/bin:/home/razor/soft/sfold/bin:/home/razor/soft/sfold:/home/razor/soft/homer/bin:/home/razor/soft/bin:/soft/bio/sequence/phylip-3.69/exe:/soft/bio/sequence/meme-4.8.1/bin:/soft/bio/sequence/miRanda-3.1/bin:/soft/bio/sequence/unafold-3.8/bin:/soft/bio/sequence/ViennaRNA-2.0.7/bin:/soft/bio/sequence/BEDTools-Version-2.16.2/bin:/soft/bio/sequence/hmmer-3.0b/bin:/soft/bio/sequence/blatSuite-34:/soft/bio/sequence/ncbi-blast-2.2.25+/bin:/soft/bio/sequence/tcoffee_9.01/bin:/soft/bio/sequence/clustalw-2.0.12/bin:/soft/bio/sequence/muscle-3.8.31:/soft/bio/sequence/DIALIGN-TX_1.0.2/bin:/soft/bio/sequence/emboss-6.4.0/bin:/soft/bio/sequence/weblogo:/soft/R/R-2.15.1/bin:/soft/bin:/usr/local/mysql/bin:/usr/lib64/qt-3.3/bin:/usr/kerberos/sbin:/usr/kerberos/bin:/usr/lib64/ccache:/usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin for UCSC tools.
Added shell variable to commit message. :P

Revert "Added /home/razor/soft/bpipe/bin:/home/razor/soft/opera/bin:/home/razor/soft/dtrx/bin:/home/razor/soft/detox/bin:/home/razor/soft/cytoscape/Cytoscape_v2.8.3:/home/razor/soft/calibre/calibre/bin:/home/razor/soft/pyicos/bin:/home/razor/soft/bpfinder/SCRIPTS:/home/razor/soft/bpfinder:/home/razor/soft/svmlight:/home/razor/soft/memeris/bin:/home/razor/soft/rnacontext/bin:/home/razor/soft/sfold/bin:/home/razor/soft/sfold:/home/razor/soft/homer/bin:/home/razor/soft/bin:/soft/bio/sequence/phylip-3.69/exe:/soft/bio/sequence/meme-4.8.1/bin:/soft/bio/sequence/miRanda-3.1/bin:/soft/bio/sequence/unafold-3.8/bin:/soft/bio/sequence/ViennaRNA-2.0.7/bin:/soft/bio/sequence/BEDTools-Version-2.16.2/bin:/soft/bio/sequence/hmmer-3.0b/bin:/soft/bio/sequence/blatSuite-34:/soft/bio/sequence/ncbi-blast-2.2.25+/bin:/soft/bio/sequence/tcoffee_9.01/bin:/soft/bio/sequence/clustalw-2.0.12/bin:/soft/bio/sequence/muscle-3.8.31:/soft/bio/sequence/DIALIGN-TX_1.0.2/bin:/soft/bio/sequence/emboss-6.4.0/bin:/soft/bio/sequence/weblogo:/soft/R/R-2.15.1/bin:/soft/bin:/usr/local/mysql/bin:/usr/lib64/qt-3.3/bin:/usr/kerberos/sbin:/usr/kerberos/bin:/usr/lib64/ccache:/usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin for UCSC tools."

This reverts commit 46d988393189a01e87e97d8f00c8706598bb3a51.
Added PATH for UCSC tools.