Improved linkage script. Add full search option over all contigs. Add extra link categories inline and inward_or_outward to output.
Add read count for each contig in linkage script
Add ambiguous linkage test cases.
Add linkage test case for orientation of short contig and read in middle
Readd multiprocessing
Merge branch 'master' of https://github.com/BinPro/CONCOCT