Testing the egit commit
Whitespace addition / removal test
Added allele to contig table
Added locus table.
Better than original schema anyway, more DRY.
Alleles are now stored for all query loci, in the locus table 'allele'
column.
_creatAlleleFiles sub to do exactly that. There is a bug that I cannot
yet identify in the printing on the locus names.
Changed _insertIntoDb to accept a hash of named elements, rather than an
unnamed array.
Updated table schema and INSERT. 
Still need to update retrieval using new schema.
Updated DB schema. 'results' table now takes both snp and binary data
with a 'type' field.
Updated the unlinking of _filtered.delta and _query_dbtemp.index files
Added locus table to _createOutput file for proper JOIN
Added WHERE clause to limit for snp/binary
_emptySqlBuffers now iterates through all tables in _sqlString
Allele file is now printed when the input is a queryFile rather than a
pan-genome created from input genomes. This means the allele data is not
stored for a pan-genome creation.
The database schema has also been modified to be more space efficient.
SNP and Binary tables and phylip files created correctly from the new
database schema.