Added commit flags to "annonate" method and CLI
Added param doc
Merge branch 'feature/splice-sites' into develop
Clean up of inline docs
*Removed* levels functionality completely
*Removed* deprecated chanjo-autopilot
*Removed* Interval class
Small docs fixes
Added new docs section about Python API
Mentioned cosmid
various docs fixes
Merge branch 'feature/stabilize-api' into develop
Updated changelog and bumped version
Merge branch 'release/v0.3.0' into develop