Updated extract-samples-from-dataset.R to cope with NGS count tables.
Merge branch 'master' of https://github.com/chipster/chipster.git
Moved Extract samples from dataset -tool to 2.12 common and added it to
NGS Utilities category.
Updated the manual for Extract samples from dataset.
Removed genomic location info columns from output if info is not
available.
Manual for create NGS experiment updated.
Conditional BED output in edgeR.
Moved DESeq and bed-utils.R to R2.15
Changed the visible names of convert-x-bam-to-edger.R scripts and
updated the manual.
Updated edgeR multivariate to BioC2.11
Updates tools-ngs.html
Updates to manuals.
chr/nochr option to htseq-count.R
edgeR classic: modified filtering based on counts, removed fixed
prior.n, added trended dispersion
edgeR glm, moved filtering and resizing before normalization
Chromosomal coord printing added to HTSeq-count
Merge branch 'master' into htseq-chr
Changes to DESeq
Added vm announcement installation
Add fruitfly to gb.