adding bgrave's MS version
adding @bgravendeel's additional references
this is a work in progress, commenting out the steps we're not automating right now
now using axel to do the actual download instead of going through Net::FTP, which is slower
adding separate shell script to do the mapping assembly
adding a re-implementation of protein-guided codon alignment using exonerate
yet another protein-guided codon alignment program using exonerate
this identifies the gene IDs of the WUR sequences and groups them by ID instead of accession
splices gene sequences into their constituent CDSs
splits a chromosome genome into a gene genome
compares a locally computed protein translation with that curated by genbank
driver script to reformat WUR data