First version imputation QC pipeline using ImputationTool.
Merge pull request #18 from freerkvandijk/master

First version of imputation study QC pipeline
Renamed pipeline and changed imputationtool reference folder variable to only reference.
Bugfixes in studyQC pipeline. Fully tested and ready for production now.
Merge pull request #19 from freerkvandijk/master

Production ready studyQC pipeline
Merge branch 'master' of https://github.com/molgenis/molgenis-pipelines
Renamed shapeit pipeline. Made modifications to finish first version of the pipeline.
ShapeIt2 minor updates