major refactoring of moving code from src to app
fixed the optimizer and documentation tools to work with dir structure changes
improved comments
Merge branch 'master' of https://github.com/ectechno/boilerplatejs
changed Sonar project properties file to reflect directory changes
fixed some warnings in YUIDocs
changed the unit tests to reflect src->app move
Merge branch 'master' of https://github.com/ectechno/boilerplatejs