Added nice to all run processes
Added more scripts for analyzation and tools
Before optimization test.
Added changes from optimization branch that were worth saving
Added a few comments for optimization by profiling
Added option to disable calculation of pressure and potential.
Allows for writing to file at only every nth timestep. Reduces
calculations too.
A bunch of changes before implementing force. Among which are saving
progress.
Added progressreporter.h and other stash.