* disambiguated sesamoid and bone
     * NTs for various mammalian terms
     * disambiguating syns for brain vs non-brain structures (e.g. cingulum)
     * Brodmann overhaul
     * added metapodium bones 1-5

! uberon definition changes
!
! Files used:
! file 1 (old): date unknown, cvs revision unknown
! file 2 (new): date unknown, cvs revision unknown

!
! Format of first line of each entry:
! Term ID : term name  ( total # annots / # direct annots)

UBERON:0001953 : presubiculum
OLD: Area 27 of Brodmann-1909 is a cytoarchitecturally defined cortical area that is a rostral part of the parahippocampal gyrus of the guenon (Brodmann-1909). It is commonly regarded as a synonym of presubiculum (Crosby-62). [WP,unvetted].
NEW: a modified six-layered cortex between the subiculum and the main part of the parahippocampal gyrus.

UBERON:0003902 : retinal neural layer
OLD: The layer of nerve cells in the retina[XAO]. The part of the retina that contains neurons and photoreceptor cells[GO].
NEW: The part of the retina that contains neurons and photoreceptor cells[GO].

UBERON:0004717 : Brodmann (1909) area 29
(was Brodmann area 29)
OLD: A cytoarchitecturally defined portion of the retrosplenial region of the cerebral cortex. In the human it is a narrow band located in the isthmus of cingulate gyrus. Cytoarchitecturally it is bounded internally by the ectosplenial area 26 and externally by the agranular retrolimbic area 30.
NEW: Brodmann area 29, also known as granular retrolimbic area 29 or granular retrosplenial cortex, is a cytoarchitecturally defined portion of the retrosplenial region of the cerebral cortex. In the human it is a narrow band located in the isthmus of cingulate gyrus. Cytoarchitecturally it is bounded internally by the ectosplenial area 26 and externally by the agranular retrolimbic area 30 (Brodmann-1909).

UBERON:0008897 : fin
OLD: An external membranous process of an aquatic animal as a fish used in propelling or guiding the body[BTO].
NEW: An external projection of an aquatic animal as a fish used in propelling or guiding the body[BTO].

UBERON:0010911 : ossicle
OLD: Skeletal element that is small dermal or endochondral bone.
NEW: Skeletal element that is often isolated, small, and variable in composition.

UBERON:0012447 : podotheca
OLD: A horny sheath covering the lowe leg of some birds.
NEW: A horny sheath covering the lower leg of some birds.

uberon
Ontology Comparison Report
==========================

Files used:
- file 1 (old): uberon-lastbuild.obo; data version: 2013-02-06
- file 2 (new): uberon.obo; data version: 2013-02-12

NEW TERMS
=========

ID	name	namespace
UBERON:0013527	pectoral flipper tubercle
UBERON:0013528	Brodmann (1909) area 11
UBERON:0013529	Brodmann area
UBERON:0013531	retrosplenial region
UBERON:0013533	Brodmann (1909) area 2
UBERON:0013535	Brodmann (1909) area 4
UBERON:0013538	Brodmann (1909) area 7
UBERON:0013539	Brodmann (1909) area 8
UBERON:0013540	Brodmann (1909) area 9
UBERON:0013541	Brodmann (1909) area 10
UBERON:0013543	Brodmann (1909) area 12
UBERON:0013544	Brodmann (1909) area 13
UBERON:0013545	Brodmann (1909) area 14
UBERON:0013546	Brodmann (1909) area 15
UBERON:0013547	Brodmann (1909) area 16
UBERON:0013550	Brodmann (1909) area 19
UBERON:0013551	Brodmann (1909) area 20
UBERON:0013552	Brodmann (1909) area 21
UBERON:0013553	Brodmann (1909) area 22
UBERON:0013554	Brodmann (1909) area 23
UBERON:0013556	Brodmann (1909) area 25
UBERON:0013558	Brodmann (1909) area 27
UBERON:0013559	Brodmann (1909) area 28
UBERON:0013560	Brodmann (1909) area 32
UBERON:0013561	Brodmann (1909) area 43
UBERON:0013562	Brodmann (1909) area 8a
UBERON:0013573	Brodmann (1909) area 40
UBERON:0013581	metapodium bone 1
UBERON:0013582	metapodium bone 2
UBERON:0013583	metapodium bone 3
UBERON:0013584	metapodium bone 4
UBERON:0013585	metapodium bone 5
UBERON:0013586	fused metapodial bones 3 and 4
UBERON:0013587	fused metacarpal bones 3 and 4
UBERON:0013588	fused metatarsal bones 3 and 4
UBERON:0013589	koniocortex
UBERON:0013590	cruciate sulcus
UBERON:0013591	postsylvian sulcus
UBERON:0013592	presylvian sulcus
UBERON:0013593	suprasylvian sulcus
UBERON:0013594	ectosylvian sulcus
UBERON:0013595	postlateral sulcus
UBERON:0013596	brain coronal sulcus
UBERON:0013598	accessory nucleus of optic tract
UBERON:0013599	dorsal accessory nucleus of optic tract
UBERON:0013600	lateral accessory nucleus of optic tract
UBERON:0013601	medial accessory nucleus of optic tract
UBERON:0013605	layer of lateral geniculate body
UBERON:0013606	magnocellular layer of dorsal nucleus of lateral geniculate body
UBERON:0013607	parvocellular layer of dorsal nucleus of lateral geniculate body
UBERON:0013608	inferior olive dorsal accessory nucleus
UBERON:0013609	inferior olive medial accessory nucleus
UBERON:0013610	inferior olive ventral accessory nucleus
UBERON:0013612	tooth cingulid
UBERON:0013613	tooth cingulum
UBERON:0013614	fasciculus aberans
UBERON:0013615	koniocellular layer of dorsal nucleus of lateral geniculate body
UBERON:0013616	primary molar tooth
UBERON:0013617	upper primary molar tooth
UBERON:0013618	secondary molar tooth
UBERON:0013619	upper secondary molar tooth
UBERON:0013620	lower primary molar tooth
UBERON:0013621	lower secondary molar tooth
UBERON:0013622	manual autopod pad
UBERON:0013623	pedal autopod pad
UBERON:0013626	medial metatarsal pad
UBERON:0013627	lateral metatarsal pad
UBERON:0013628	pollical pad
UBERON:0013629	hallical pad
UBERON:0013630	short bone
UBERON:0013631	sesamoid element
UBERON:0013632	sesamoid cartilage

OBSOLETIONS
===========
UBERON:0001023, obsolete dendrite
UBERON:0001024, obsolete neurite
UBERON:0001025, synapse
UBERON:0001030, obsolete synaptic ribbon

TERM MERGES
===========

None

TERM CHANGES
============

KEY:  'A' : added, 'D' : deleted, 'C' : changed

Term ID	name	alt_id	def	comment	subset	synonym	xref	is_a	intersection_of	disjoint_from	relationship	is_obsolete
UBERON:0000935								1 D, 1 A
UBERON:0000993						1 D
UBERON:0001013
UBERON:0001023	C			C			10 D	1 D				A
UBERON:0001024	C			C			6 D	1 D				A
UBERON:0001025				C			9 D	1 D				A
UBERON:0001030	C			D			3 D	2 D			1 D	A
UBERON:0001299						1 A
UBERON:0001393						3 D, 5 A
UBERON:0001466						1 A
UBERON:0001479						1 D, 1 A	1 D	1 D, 1 A	2 A		1 D
UBERON:0001570											2 A
UBERON:0001794
UBERON:0001888				C		1 A
UBERON:0001953			C	C		3 D, 2 A					1 D, 1 A
UBERON:0002098				C		1 D, 1 A
UBERON:0002102				C		1 A
UBERON:0002245						1 A
UBERON:0002256						1 A
UBERON:0002336								1 D, 1 A
UBERON:0002390
UBERON:0002423
UBERON:0002436						2 D, 4 A
UBERON:0002465
UBERON:0002479			A
UBERON:0002541
UBERON:0002595			A			1 D, 2 A		1 D, 1 A
UBERON:0002687	C
UBERON:0002688			D			1 D, 2 A
UBERON:0002721						1 D, 2 A
UBERON:0002728						1 D, 1 A	1 D
UBERON:0002829						1 A
UBERON:0002895						4 D, 1 A	2 D
UBERON:0002933								1 D, 1 A			1 A
UBERON:0003062
UBERON:0003091
UBERON:0003467								2 D
UBERON:0003631						1 A
UBERON:0003632						1 A
UBERON:0003633						1 A
UBERON:0003634						1 A
UBERON:0003635						1 A
UBERON:0003645								1 A
UBERON:0003646								1 A
UBERON:0003647								1 A
UBERON:0003648								1 A
UBERON:0003649								1 A
UBERON:0003650								1 A
UBERON:0003651								1 A
UBERON:0003652								1 A
UBERON:0003653								1 A
UBERON:0003654								1 A
UBERON:0003666						3 D, 3 A	1 D	1 D, 1 A			1 A
UBERON:0003667						2 D, 2 A	1 D	1 D, 1 A			1 A
UBERON:0003889						2 D, 4 A
UBERON:0003902			C
UBERON:0003925			A					1 A
UBERON:0003926								1 A
UBERON:0003961	C					1 A				1 A
UBERON:0004685			D			2 D	1 D
UBERON:0004717	C		C			6 A	1 A	1 D, 1 A
UBERON:0004718	C		C			6 A	1 A	1 D, 1 A
UBERON:0004728						1 A
UBERON:0004739			C	C		1 D, 3 A					1 D, 1 A
UBERON:0004880
UBERON:0005798						1 A
UBERON:0005893					1 A
UBERON:0005970											1 A
UBERON:0006095		1 A				1 D, 8 A	1 A	1 D, 1 A			1 D
UBERON:0006096		1 A				1 D, 8 A	1 A	2 D, 1 A			1 D
UBERON:0006099						1 A		1 D, 1 A
UBERON:0006100						1 A		1 D, 1 A
UBERON:0006101						1 D, 2 A		1 D, 1 A
UBERON:0006102						1 D, 2 A		1 D, 1 A			1 D
UBERON:0006104						1 A		1 D, 1 A			1 D
UBERON:0006378						1 D, 2 A
UBERON:0006471						1 D, 2 A
UBERON:0006472						1 D, 2 A
UBERON:0006473			D			1 D, 3 A
UBERON:0006474			A			1 D, 3 A
UBERON:0006475			A			1 D, 3 A	1 A
UBERON:0006476			A			1 D, 3 A
UBERON:0006477			A			1 D, 3 A
UBERON:0006478			A			1 D, 3 A
UBERON:0006479						1 D, 2 A
UBERON:0006480			A			1 D, 2 A
UBERON:0006481						1 D, 2 A
UBERON:0006482			A			1 D, 3 A
UBERON:0006483						1 D, 2 A
UBERON:0006484			A			1 D, 3 A
UBERON:0006485			A			1 D, 2 A
UBERON:0006486						1 D, 2 A
UBERON:0006496						1 A
UBERON:0006558
UBERON:0006685								1 D, 2 A			1 A
UBERON:0007283			D
UBERON:0007812						1 A
UBERON:0007993								2 D
UBERON:0007997								1 D, 1 A
UBERON:0008000								1 D, 1 A
UBERON:0008257								1 D
UBERON:0008294								1 A
UBERON:0008295								1 A
UBERON:0008593	C							1 D			1 A
UBERON:0008594	C							1 D
UBERON:0008595						1 D, 1 A
UBERON:0008596						2 D, 1 A
UBERON:0008838	C			A		4 D
UBERON:0008839			A					1 D, 1 A
UBERON:0008840			A					1 D, 1 A
UBERON:0008897			C
UBERON:0010311								1 D
UBERON:0010437			C			2 A		1 D, 1 A			2 A
UBERON:0010759								2 D
UBERON:0010911			C					1 D, 1 A			1 D
UBERON:0010928	C		A			1 D, 2 A					2 A
UBERON:0010936	C					1 A					1 A
UBERON:0011581						1 A
UBERON:0011785								1 A
UBERON:0011786								1 A
UBERON:0011984						1 A
UBERON:0012104								2 D
UBERON:0012106						2 A
UBERON:0012127								1 A
UBERON:0012137						1 A
UBERON:0012138						1 A
UBERON:0012291						2 A
UBERON:0012349				A		4 A			1 D, 1 A
UBERON:0012350								1 D, 1 A
UBERON:0012447			C
UBERON:0013164						1 A

FILE STATS
==========

Term counts for the old and new files

Ontology	Old file	New file	Change
uberon	8275	8343	+68
	(6724 defined)	(6760 defined)

Obsolete	196	200	+4
	(2.3% of total)	 (2.3% of total)	(+2.0%)

Totals	8275	8343	+72 (+0.8%)
	6724 (81.3%) defined	6760 (81.0%) defined
	8471 inc. obs	8543 inc. obs