Fix some minor typos; move around some phrases
Add a reference .docx file
Customize makefile - xelatex and reference.docx
Reformat and add to ref.bib
Minor update to mind map of ss3sim paper
Remove code format from "ss3sim"; add word to ss3sim title
Make substantial additions to the ss3sim manuscript
Merge pull request #4 from seananderson/master

Fix some minor typos; move some phrases around