removed bin size optional parameter
added a new option to bamCorrelate in which a bed file can be especified. Only those regions in the bed file would be considered for correlation.
added a new option to bamCorrelate in which a bed file can be especified. Only those regions in the bed file would be considered for correlation.
added a new option to bamCorrelate in which a bed file can be especified. Only those regions in the bed file would be considered for correlation.
add a warning when a group is too small to plot in the heatmap
Merge branch 'master' of https://github.com/fidelram/deepTools
Merge branch 'master' of https://github.com/fidelram/deepTools
Merge branch 'master' of https://github.com/fidelram/deepTools
changed url in help message that was causing a block
trying to solve a git merge problem
Merge branch 'master' of https://github.com/fidelram/deepTools
Merge branch 'master' of https://github.com/fidelram/deepTools
adding method to remove outliers in bamCorrelate
Merge branch 'master' of git://github.com/fidelram/deepTools
improving header
Update README.md

added table of contents and outline
Update README.md
Update README.md
added error message to computeGCBias when the input bam file is not idexed
adding check to determine if bam file exists, before cheking if .bai file exists