initial. added high level overview.
Added new report class
added report class
initial cludge pipeline working
cludge pipeline working for chr22 on atlas vcf
skipping all MNPs -- trouble with downstream vcf tools.
Cludge pipeline functioning for all three branches
initial. added high level overview.
Added new report class
added report class
initial cludge pipeline working
cludge pipeline working for chr22 on atlas vcf
skipping all MNPs -- trouble with downstream vcf tools.
Cludge pipeline functioning for all three branches
fixed import
added genotype field
output vcf now has header and info field which record the QUAL scores output from each caller.
Merge branch 'master' of https://github.com/vtrubets/galaxy.consensus into parallel_consensus
changed CLI slightly and modified output file naming convention.
init for files. need to move these into separate directory