This commit was manufactured by cvs2svn to create branch 'branch-
ensembl-66'.

Sprout from master 2012-02-14 13:48:49 UTC Iliana Toneva <it2@sanger.ac.uk> 'typo fixed'
Delete:
    modules/Bio/EnsEMBL/GlyphSet.pm
    modules/Bio/EnsEMBL/GlyphSet/_synteny.pm
    modules/Bio/EnsEMBL/GlyphSet/genetree.pm
    modules/Bio/EnsEMBL/GlyphSet/scalebar.pm
Align around homologue feature in multi-species view for Vega (initially).
Added code to get bam adaptor for local data files
correct method for joining expaned genes
This commit was manufactured by cvs2svn to create branch 'branch-
ensembl-66'.

Cherrypick from master 2012-03-20 13:25:04 UTC Simon Brent <sb23@sanger.ac.uk> 'fix node zmenus links':
    modules/Bio/EnsEMBL/GlyphSet.pm
    modules/Bio/EnsEMBL/GlyphSet/_synteny.pm
    modules/Bio/EnsEMBL/GlyphSet/genetree.pm
    modules/Bio/EnsEMBL/GlyphSet/scalebar.pm
Colorize chromosome labels in genome view (EG: ENSEMBL-1404)