initial check-in

git-svn-id: https://svn.code.sf.net/p/snpomatic/code@1 5be0ef4d-a92a-40f4-82df-6b5da1e6e661
Make g++ default

git-svn-id: https://svn.code.sf.net/p/snpomatic/code@2 5be0ef4d-a92a-40f4-82df-6b5da1e6e661
GPL

git-svn-id: https://svn.code.sf.net/p/snpomatic/code@3 5be0ef4d-a92a-40f4-82df-6b5da1e6e661
The manual

git-svn-id: https://svn.code.sf.net/p/snpomatic/code@4 5be0ef4d-a92a-40f4-82df-6b5da1e6e661
wobble speedup

git-svn-id: https://svn.code.sf.net/p/snpomatic/code@5 5be0ef4d-a92a-40f4-82df-6b5da1e6e661
automatic read length detection for split fastq files

git-svn-id: https://svn.code.sf.net/p/snpomatic/code@6 5be0ef4d-a92a-40f4-82df-6b5da1e6e661
--faceaway option

git-svn-id: https://svn.code.sf.net/p/snpomatic/code@7 5be0ef4d-a92a-40f4-82df-6b5da1e6e661
misc

git-svn-id: https://svn.code.sf.net/p/snpomatic/code@8 5be0ef4d-a92a-40f4-82df-6b5da1e6e661
compatability update

git-svn-id: https://svn.code.sf.net/p/snpomatic/code@9 5be0ef4d-a92a-40f4-82df-6b5da1e6e661
minor bugfix

git-svn-id: https://svn.code.sf.net/p/snpomatic/code@10 5be0ef4d-a92a-40f4-82df-6b5da1e6e661
Mac fix

git-svn-id: https://svn.code.sf.net/p/snpomatic/code@11 5be0ef4d-a92a-40f4-82df-6b5da1e6e661
Mac fix

git-svn-id: https://svn.code.sf.net/p/snpomatic/code@12 5be0ef4d-a92a-40f4-82df-6b5da1e6e661
initial attempt at varying input read length detection

git-svn-id: https://svn.code.sf.net/p/snpomatic/code@13 5be0ef4d-a92a-40f4-82df-6b5da1e6e661
bugfix

git-svn-id: https://svn.code.sf.net/p/snpomatic/code@14 5be0ef4d-a92a-40f4-82df-6b5da1e6e661
Merge remote-tracking branch 'upstream'