added a new version of map.uniprot... this new version uses the longest peptide. script works
added the 3rd version of the mapping script(incomplete:waiting on the completion of the new 13.proteomes.db) and the database.remove.patch.entries.13... script
added a script that tests if each proteome has patches, database.remove.patch.entries.13.07.24.py can reliably parse headers
bug fixes
redoing the cleanup
redoing cleanup
finished fixing the archiving action (reset unmodified files to their prior name so that their git history could still be accessed
added cgs.convert.gene.files.to.fasta.13.07.35.py
script works
script actually works now
script works
created test.candidate.genesets.db.13.07.26.py (checks that when the candidate.genesets.fa is blasted against the db, every result matches itself)
added fish.oct.cgs.using.new.ensembl.13.07.26.py. the process that asks the user for the name and location of the cgs works.
added a new script to reorganize the ionchannels (archived the files used to test and create the ensembl cgs)
added a script that created a list of the ids in the candidate.genesets.fa