Preparing for PyPI: move code and tests to 'PyDSTool' subfolder

--HG--
rename : Events.py => PyDSTool/Events.py
rename : FAQ.html => PyDSTool/FAQ.html
rename : FuncSpec.py => PyDSTool/FuncSpec.py
rename : Generator/ADMC_ODEsystem.py => PyDSTool/Generator/ADMC_ODEsystem.py
rename : Generator/DDEsystem.py => PyDSTool/Generator/DDEsystem.py
rename : Generator/Dopri_ODEsystem.py => PyDSTool/Generator/Dopri_ODEsystem.py
rename : Generator/EmbeddedSysGen.py => PyDSTool/Generator/EmbeddedSysGen.py
rename : Generator/Euler_ODEsystem.py => PyDSTool/Generator/Euler_ODEsystem.py
rename : Generator/ExplicitFnGen.py => PyDSTool/Generator/ExplicitFnGen.py
rename : Generator/ExtrapolateTable.py => PyDSTool/Generator/ExtrapolateTable.py
rename : Generator/ImplicitFnGen.py => PyDSTool/Generator/ImplicitFnGen.py
rename : Generator/InterpolateTable.py => PyDSTool/Generator/InterpolateTable.py
rename : Generator/LookupTable.py => PyDSTool/Generator/LookupTable.py
rename : Generator/Makefile => PyDSTool/Generator/Makefile
rename : Generator/MapSystem.py => PyDSTool/Generator/MapSystem.py
rename : Generator/ODEsystem.py => PyDSTool/Generator/ODEsystem.py
rename : Generator/Radau_ODEsystem.py => PyDSTool/Generator/Radau_ODEsystem.py
rename : Generator/Vode_ODEsystem.py => PyDSTool/Generator/Vode_ODEsystem.py
rename : Generator/__init__.py => PyDSTool/Generator/__init__.py
rename : Generator/allimports.py => PyDSTool/Generator/allimports.py
rename : Generator/baseclasses.py => PyDSTool/Generator/baseclasses.py
rename : Generator/messagecodes.py => PyDSTool/Generator/messagecodes.py
rename : Interval.py => PyDSTool/Interval.py
rename : MProject.py => PyDSTool/MProject.py
rename : Makefile => PyDSTool/Makefile
rename : Model.py => PyDSTool/Model.py
rename : ModelConstructor.py => PyDSTool/ModelConstructor.py
rename : ModelSpec.py => PyDSTool/ModelSpec.py
rename : Points.py => PyDSTool/Points.py
rename : PyCont/.DS_Store => PyDSTool/PyCont/.DS_Store
rename : PyCont/BifPoint.py => PyDSTool/PyCont/BifPoint.py
rename : PyCont/ContClass.py => PyDSTool/PyCont/ContClass.py
rename : PyCont/Continuation.py => PyDSTool/PyCont/Continuation.py
rename : PyCont/Makefile => PyDSTool/PyCont/Makefile
rename : PyCont/Plotting.py => PyDSTool/PyCont/Plotting.py
rename : PyCont/README => PyDSTool/PyCont/README
rename : PyCont/TODO => PyDSTool/PyCont/TODO
rename : PyCont/TestFunc.py => PyDSTool/PyCont/TestFunc.py
rename : PyCont/__init__.py => PyDSTool/PyCont/__init__.py
rename : PyCont/auto/.autorc => PyDSTool/PyCont/auto/.autorc
rename : PyCont/auto/README => PyDSTool/PyCont/auto/README
rename : PyCont/auto/cmds/auto.env.csh => PyDSTool/PyCont/auto/cmds/auto.env.csh
rename : PyCont/auto/cmds/auto.env.sh => PyDSTool/PyCont/auto/cmds/auto.env.sh
rename : PyCont/auto/demos/ab/Makefile => PyDSTool/PyCont/auto/demos/ab/Makefile
rename : PyCont/auto/demos/ab/ab.c => PyDSTool/PyCont/auto/demos/ab/ab.c
rename : PyCont/auto/demos/lor/Makefile => PyDSTool/PyCont/auto/demos/lor/Makefile
rename : PyCont/auto/demos/lor/lor.c => PyDSTool/PyCont/auto/demos/lor/lor.c
rename : PyCont/auto/demos/lor/lor.c.dev => PyDSTool/PyCont/auto/demos/lor/lor.c.dev
rename : PyCont/auto/demos/lor/lor.dat => PyDSTool/PyCont/auto/demos/lor/lor.dat
rename : PyCont/auto/dev/cflow.out => PyDSTool/PyCont/auto/dev/cflow.out
rename : PyCont/auto/dev/setup.py => PyDSTool/PyCont/auto/dev/setup.py
rename : PyCont/auto/dev/setup.py.lib => PyDSTool/PyCont/auto/dev/setup.py.lib
rename : PyCont/auto/dev/setup.py.works => PyDSTool/PyCont/auto/dev/setup.py.works
rename : PyCont/auto/module/Makefile => PyDSTool/PyCont/auto/module/Makefile
rename : PyCont/auto/module/automod.c => PyDSTool/PyCont/auto/module/automod.c
rename : PyCont/auto/module/automod.i => PyDSTool/PyCont/auto/module/automod.i
rename : PyCont/auto/module/include/Makefile => PyDSTool/PyCont/auto/module/include/Makefile
rename : PyCont/auto/module/include/automod.h => PyDSTool/PyCont/auto/module/include/automod.h
rename : PyCont/auto/module/include/autovfield.h => PyDSTool/PyCont/auto/module/include/autovfield.h
rename : PyCont/auto/module/include/interface.h => PyDSTool/PyCont/auto/module/include/interface.h
rename : PyCont/auto/module/interface.c => PyDSTool/PyCont/auto/module/interface.c
rename : PyCont/auto/src/Makefile => PyDSTool/PyCont/auto/src/Makefile
rename : PyCont/auto/src/README => PyDSTool/PyCont/auto/src/README
rename : PyCont/auto/src/autlab.c => PyDSTool/PyCont/auto/src/autlab.c
rename : PyCont/auto/src/autlib1.c => PyDSTool/PyCont/auto/src/autlib1.c
rename : PyCont/auto/src/autlib2.c => PyDSTool/PyCont/auto/src/autlib2.c
rename : PyCont/auto/src/autlib3.c => PyDSTool/PyCont/auto/src/autlib3.c
rename : PyCont/auto/src/autlib4.c => PyDSTool/PyCont/auto/src/autlib4.c
rename : PyCont/auto/src/autlib5.c => PyDSTool/PyCont/auto/src/autlib5.c
rename : PyCont/auto/src/auto.c => PyDSTool/PyCont/auto/src/auto.c
rename : PyCont/auto/src/conpar.c => PyDSTool/PyCont/auto/src/conpar.c
rename : PyCont/auto/src/dgesvd.c => PyDSTool/PyCont/auto/src/dgesvd.c
rename : PyCont/auto/src/dmatrix.c => PyDSTool/PyCont/auto/src/dmatrix.c
rename : PyCont/auto/src/eispack.c => PyDSTool/PyCont/auto/src/eispack.c
rename : PyCont/auto/src/fcon.c => PyDSTool/PyCont/auto/src/fcon.c
rename : PyCont/auto/src/include/Makefile => PyDSTool/PyCont/auto/src/include/Makefile
rename : PyCont/auto/src/include/auto.h => PyDSTool/PyCont/auto/src/include/auto.h
rename : PyCont/auto/src/include/auto_c.h => PyDSTool/PyCont/auto/src/include/auto_c.h
rename : PyCont/auto/src/include/auto_f2c.h => PyDSTool/PyCont/auto/src/include/auto_f2c.h
rename : PyCont/auto/src/include/auto_mpi.h => PyDSTool/PyCont/auto/src/include/auto_mpi.h
rename : PyCont/auto/src/include/auto_types.h => PyDSTool/PyCont/auto/src/include/auto_types.h
rename : PyCont/auto/src/libf2c/Makefile => PyDSTool/PyCont/auto/src/libf2c/Makefile
rename : PyCont/auto/src/libf2c/cabs.c => PyDSTool/PyCont/auto/src/libf2c/cabs.c
rename : PyCont/auto/src/libf2c/d_imag.c => PyDSTool/PyCont/auto/src/libf2c/d_imag.c
rename : PyCont/auto/src/libf2c/d_lg10.c => PyDSTool/PyCont/auto/src/libf2c/d_lg10.c
rename : PyCont/auto/src/libf2c/d_sign.c => PyDSTool/PyCont/auto/src/libf2c/d_sign.c
rename : PyCont/auto/src/libf2c/i_dnnt.c => PyDSTool/PyCont/auto/src/libf2c/i_dnnt.c
rename : PyCont/auto/src/libf2c/i_nint.c => PyDSTool/PyCont/auto/src/libf2c/i_nint.c
rename : PyCont/auto/src/libf2c/pow_dd.c => PyDSTool/PyCont/auto/src/libf2c/pow_dd.c
rename : PyCont/auto/src/libf2c/pow_di.c => PyDSTool/PyCont/auto/src/libf2c/pow_di.c
rename : PyCont/auto/src/libf2c/pow_ii.c => PyDSTool/PyCont/auto/src/libf2c/pow_ii.c
rename : PyCont/auto/src/libf2c/r_lg10.c => PyDSTool/PyCont/auto/src/libf2c/r_lg10.c
rename : PyCont/auto/src/libf2c/z_abs.c => PyDSTool/PyCont/auto/src/libf2c/z_abs.c
rename : PyCont/auto/src/libf2c/z_exp.c => PyDSTool/PyCont/auto/src/libf2c/z_exp.c
rename : PyCont/auto/src/libf2c/z_log.c => PyDSTool/PyCont/auto/src/libf2c/z_log.c
rename : PyCont/auto/src/reduce.c => PyDSTool/PyCont/auto/src/reduce.c
rename : PyCont/auto/src/setubv.c => PyDSTool/PyCont/auto/src/setubv.c
rename : PyCont/biblio_for_examples.txt => PyDSTool/PyCont/biblio_for_examples.txt
rename : PyCont/misc.py => PyDSTool/PyCont/misc.py
rename : Redirector.py => PyDSTool/Redirector.py
rename : Symbolic.py => PyDSTool/Symbolic.py
rename : Toolbox/ActivationFuncs.py => PyDSTool/Toolbox/ActivationFuncs.py
rename : Toolbox/DSSRT_tools.py => PyDSTool/Toolbox/DSSRT_tools.py
rename : Toolbox/FR.py => PyDSTool/Toolbox/FR.py
rename : Toolbox/FSM.py => PyDSTool/Toolbox/FSM.py
rename : Toolbox/InputProfile.py => PyDSTool/Toolbox/InputProfile.py
rename : Toolbox/Makefile => PyDSTool/Toolbox/Makefile
rename : Toolbox/ModelEst.py => PyDSTool/Toolbox/ModelEst.py
rename : Toolbox/ModelHelper.py => PyDSTool/Toolbox/ModelHelper.py
rename : Toolbox/NineML.py => PyDSTool/Toolbox/NineML.py
rename : Toolbox/PRCtools.py => PyDSTool/Toolbox/PRCtools.py
rename : Toolbox/ParamEst.py => PyDSTool/Toolbox/ParamEst.py
rename : Toolbox/PySCes_SBML.py => PyDSTool/Toolbox/PySCes_SBML.py
rename : Toolbox/__init__.py => PyDSTool/Toolbox/__init__.py
rename : Toolbox/adjointPRC.py => PyDSTool/Toolbox/adjointPRC.py
rename : Toolbox/data_analysis.py => PyDSTool/Toolbox/data_analysis.py
rename : Toolbox/dssrt.py => PyDSTool/Toolbox/dssrt.py
rename : Toolbox/event_driven_simulator.py => PyDSTool/Toolbox/event_driven_simulator.py
rename : Toolbox/fracdim.py => PyDSTool/Toolbox/fracdim.py
rename : Toolbox/makeSloppyModel.py => PyDSTool/Toolbox/makeSloppyModel.py
rename : Toolbox/mechmatlib.py => PyDSTool/Toolbox/mechmatlib.py
rename : Toolbox/model_primitives.py => PyDSTool/Toolbox/model_primitives.py
rename : Toolbox/neuralcomp.py => PyDSTool/Toolbox/neuralcomp.py
rename : Toolbox/neuro_data.py => PyDSTool/Toolbox/neuro_data.py
rename : Toolbox/optimizers/__init__.py => PyDSTool/Toolbox/optimizers/__init__.py
rename : Toolbox/optimizers/criterion/__init__.py => PyDSTool/Toolbox/optimizers/criterion/__init__.py
rename : Toolbox/optimizers/criterion/composite_criteria.py => PyDSTool/Toolbox/optimizers/criterion/composite_criteria.py
rename : Toolbox/optimizers/criterion/criteria.py => PyDSTool/Toolbox/optimizers/criterion/criteria.py
rename : Toolbox/optimizers/criterion/facilities.py => PyDSTool/Toolbox/optimizers/criterion/facilities.py
rename : Toolbox/optimizers/criterion/information_criteria.py => PyDSTool/Toolbox/optimizers/criterion/information_criteria.py
rename : Toolbox/optimizers/criterion/tests/test_composite_criteria.py => PyDSTool/Toolbox/optimizers/criterion/tests/test_composite_criteria.py
rename : Toolbox/optimizers/criterion/tests/test_criteria.py => PyDSTool/Toolbox/optimizers/criterion/tests/test_criteria.py
rename : Toolbox/optimizers/criterion/tests/test_facilities.py => PyDSTool/Toolbox/optimizers/criterion/tests/test_facilities.py
rename : Toolbox/optimizers/criterion/tests/test_information_criteria.py => PyDSTool/Toolbox/optimizers/criterion/tests/test_information_criteria.py
rename : Toolbox/optimizers/defaults.py => PyDSTool/Toolbox/optimizers/defaults.py
rename : Toolbox/optimizers/helpers/__init__.py => PyDSTool/Toolbox/optimizers/helpers/__init__.py
rename : Toolbox/optimizers/helpers/finite_difference.py => PyDSTool/Toolbox/optimizers/helpers/finite_difference.py
rename : Toolbox/optimizers/helpers/levenberg_marquardt.py => PyDSTool/Toolbox/optimizers/helpers/levenberg_marquardt.py
rename : Toolbox/optimizers/helpers/quadratic.py => PyDSTool/Toolbox/optimizers/helpers/quadratic.py
rename : Toolbox/optimizers/helpers/tests/test_finite_difference.py => PyDSTool/Toolbox/optimizers/helpers/tests/test_finite_difference.py
rename : Toolbox/optimizers/helpers/tests/test_levenberg_marquardt.py => PyDSTool/Toolbox/optimizers/helpers/tests/test_levenberg_marquardt.py
rename : Toolbox/optimizers/helpers/tests/test_quadratic.py => PyDSTool/Toolbox/optimizers/helpers/tests/test_quadratic.py
rename : Toolbox/optimizers/line_search/__init__.py => PyDSTool/Toolbox/optimizers/line_search/__init__.py
rename : Toolbox/optimizers/line_search/adaptive_last_step_modifier.py => PyDSTool/Toolbox/optimizers/line_search/adaptive_last_step_modifier.py
rename : Toolbox/optimizers/line_search/backtracking_search.py => PyDSTool/Toolbox/optimizers/line_search/backtracking_search.py
rename : Toolbox/optimizers/line_search/barzilai_borwein_non_monotone_search.py => PyDSTool/Toolbox/optimizers/line_search/barzilai_borwein_non_monotone_search.py
rename : Toolbox/optimizers/line_search/barzilai_borwein_search.py => PyDSTool/Toolbox/optimizers/line_search/barzilai_borwein_search.py
rename : Toolbox/optimizers/line_search/cubic_interpolation.py => PyDSTool/Toolbox/optimizers/line_search/cubic_interpolation.py
rename : Toolbox/optimizers/line_search/damped_line_search.py => PyDSTool/Toolbox/optimizers/line_search/damped_line_search.py
rename : Toolbox/optimizers/line_search/fibonacci_section.py => PyDSTool/Toolbox/optimizers/line_search/fibonacci_section.py
rename : Toolbox/optimizers/line_search/fixed_last_step_modifier.py => PyDSTool/Toolbox/optimizers/line_search/fixed_last_step_modifier.py
rename : Toolbox/optimizers/line_search/golden_section.py => PyDSTool/Toolbox/optimizers/line_search/golden_section.py
rename : Toolbox/optimizers/line_search/goldstein_rule.py => PyDSTool/Toolbox/optimizers/line_search/goldstein_rule.py
rename : Toolbox/optimizers/line_search/hyperbolic_line_search.py => PyDSTool/Toolbox/optimizers/line_search/hyperbolic_line_search.py
rename : Toolbox/optimizers/line_search/quadratic_interpolation.py => PyDSTool/Toolbox/optimizers/line_search/quadratic_interpolation.py
rename : Toolbox/optimizers/line_search/scaled_line_search.py => PyDSTool/Toolbox/optimizers/line_search/scaled_line_search.py
rename : Toolbox/optimizers/line_search/simple_line_search.py => PyDSTool/Toolbox/optimizers/line_search/simple_line_search.py
rename : Toolbox/optimizers/line_search/strong_wolfe_powell_rule.py => PyDSTool/Toolbox/optimizers/line_search/strong_wolfe_powell_rule.py
rename : Toolbox/optimizers/line_search/tests/test_adaptive_last_step_modifier.py => PyDSTool/Toolbox/optimizers/line_search/tests/test_adaptive_last_step_modifier.py
rename : Toolbox/optimizers/line_search/tests/test_backtracking_search.py => PyDSTool/Toolbox/optimizers/line_search/tests/test_backtracking_search.py
rename : Toolbox/optimizers/line_search/tests/test_cubic_interpolation.py => PyDSTool/Toolbox/optimizers/line_search/tests/test_cubic_interpolation.py
rename : Toolbox/optimizers/line_search/tests/test_damped_line_search.py => PyDSTool/Toolbox/optimizers/line_search/tests/test_damped_line_search.py
rename : Toolbox/optimizers/line_search/tests/test_fibonacci_section.py => PyDSTool/Toolbox/optimizers/line_search/tests/test_fibonacci_section.py
rename : Toolbox/optimizers/line_search/tests/test_fixed_last_step_modifier.py => PyDSTool/Toolbox/optimizers/line_search/tests/test_fixed_last_step_modifier.py
rename : Toolbox/optimizers/line_search/tests/test_golden_section.py => PyDSTool/Toolbox/optimizers/line_search/tests/test_golden_section.py
rename : Toolbox/optimizers/line_search/tests/test_goldstein_rule.py => PyDSTool/Toolbox/optimizers/line_search/tests/test_goldstein_rule.py
rename : Toolbox/optimizers/line_search/tests/test_quadratic_interpolation.py => PyDSTool/Toolbox/optimizers/line_search/tests/test_quadratic_interpolation.py
rename : Toolbox/optimizers/line_search/tests/test_simple_line_search.py => PyDSTool/Toolbox/optimizers/line_search/tests/test_simple_line_search.py
rename : Toolbox/optimizers/line_search/tests/test_strong_wolfe_powell_rule.py => PyDSTool/Toolbox/optimizers/line_search/tests/test_strong_wolfe_powell_rule.py
rename : Toolbox/optimizers/line_search/tests/test_wolfe_powell_rule.py => PyDSTool/Toolbox/optimizers/line_search/tests/test_wolfe_powell_rule.py
rename : Toolbox/optimizers/line_search/wolfe_powell_rule.py => PyDSTool/Toolbox/optimizers/line_search/wolfe_powell_rule.py
rename : Toolbox/optimizers/optimizer/__init__.py => PyDSTool/Toolbox/optimizers/optimizer/__init__.py
rename : Toolbox/optimizers/optimizer/optimizer.py => PyDSTool/Toolbox/optimizers/optimizer/optimizer.py
rename : Toolbox/optimizers/optimizer/standard_optimizer.py => PyDSTool/Toolbox/optimizers/optimizer/standard_optimizer.py
rename : Toolbox/optimizers/optimizer/standard_optimizer_modifying.py => PyDSTool/Toolbox/optimizers/optimizer/standard_optimizer_modifying.py
rename : Toolbox/optimizers/step/__init__.py => PyDSTool/Toolbox/optimizers/step/__init__.py
rename : Toolbox/optimizers/step/conjugate_gradient_step.py => PyDSTool/Toolbox/optimizers/step/conjugate_gradient_step.py
rename : Toolbox/optimizers/step/goldfeld_step.py => PyDSTool/Toolbox/optimizers/step/goldfeld_step.py
rename : Toolbox/optimizers/step/goldstein_price_step.py => PyDSTool/Toolbox/optimizers/step/goldstein_price_step.py
rename : Toolbox/optimizers/step/gradient_step.py => PyDSTool/Toolbox/optimizers/step/gradient_step.py
rename : Toolbox/optimizers/step/local_brute_force_1dstep.py => PyDSTool/Toolbox/optimizers/step/local_brute_force_1dstep.py
rename : Toolbox/optimizers/step/marquardt_step.py => PyDSTool/Toolbox/optimizers/step/marquardt_step.py
rename : Toolbox/optimizers/step/newton_step.py => PyDSTool/Toolbox/optimizers/step/newton_step.py
rename : Toolbox/optimizers/step/partial_step.py => PyDSTool/Toolbox/optimizers/step/partial_step.py
rename : Toolbox/optimizers/step/quasi_newton_step.py => PyDSTool/Toolbox/optimizers/step/quasi_newton_step.py
rename : Toolbox/optimizers/step/restart_conjugate_gradient.py => PyDSTool/Toolbox/optimizers/step/restart_conjugate_gradient.py
rename : Toolbox/optimizers/step/tests/test_conjugate_gradient_step.py => PyDSTool/Toolbox/optimizers/step/tests/test_conjugate_gradient_step.py
rename : Toolbox/optimizers/step/tests/test_goldstein_price_step.py => PyDSTool/Toolbox/optimizers/step/tests/test_goldstein_price_step.py
rename : Toolbox/optimizers/step/tests/test_gradient_step.py => PyDSTool/Toolbox/optimizers/step/tests/test_gradient_step.py
rename : Toolbox/optimizers/step/tests/test_marquardt_step.py => PyDSTool/Toolbox/optimizers/step/tests/test_marquardt_step.py
rename : Toolbox/optimizers/step/tests/test_newton_step.py => PyDSTool/Toolbox/optimizers/step/tests/test_newton_step.py
rename : Toolbox/optimizers/step/tests/test_partial_step.py => PyDSTool/Toolbox/optimizers/step/tests/test_partial_step.py
rename : Toolbox/optimizers/step/tests/test_quasi_newton_step.py => PyDSTool/Toolbox/optimizers/step/tests/test_quasi_newton_step.py
rename : Toolbox/optimizers/step/tests/test_restart_conjugate_gradient.py => PyDSTool/Toolbox/optimizers/step/tests/test_restart_conjugate_gradient.py
rename : Toolbox/optimizers/tests/__init__.py => PyDSTool/Toolbox/optimizers/tests/__init__.py
rename : Toolbox/optimizers/tests/test_powell.py => PyDSTool/Toolbox/optimizers/tests/test_powell.py
rename : Toolbox/optimizers/tests/test_quadratic.py => PyDSTool/Toolbox/optimizers/tests/test_quadratic.py
rename : Toolbox/optimizers/tests/test_rosenbrock.py => PyDSTool/Toolbox/optimizers/tests/test_rosenbrock.py
rename : Toolbox/phaseplane.py => PyDSTool/Toolbox/phaseplane.py
rename : Toolbox/prep_boxplot.py => PyDSTool/Toolbox/prep_boxplot.py
rename : Toolbox/synthetic_data.py => PyDSTool/Toolbox/synthetic_data.py
rename : Toolbox/syntheticdata.py => PyDSTool/Toolbox/syntheticdata.py
rename : Toolbox/test_protocols.py => PyDSTool/Toolbox/test_protocols.py
rename : Trajectory.py => PyDSTool/Trajectory.py
rename : Variable.py => PyDSTool/Variable.py
rename : __init__.py => PyDSTool/__init__.py
rename : common.py => PyDSTool/common.py
rename : conf.py => PyDSTool/conf.py
rename : convert2unix.sh => PyDSTool/convert2unix.sh
rename : errors.py => PyDSTool/errors.py
rename : fixedpickle.py => PyDSTool/fixedpickle.py
rename : integrator.py => PyDSTool/integrator.py
rename : integrator/Makefile => PyDSTool/integrator/Makefile
rename : integrator/dc_lapack.f => PyDSTool/integrator/dc_lapack.f
rename : integrator/dop853.c => PyDSTool/integrator/dop853.c
rename : integrator/dop853.h => PyDSTool/integrator/dop853.h
rename : integrator/dop853.i => PyDSTool/integrator/dop853.i
rename : integrator/dop853mod.c => PyDSTool/integrator/dop853mod.c
rename : integrator/dop853mod.h => PyDSTool/integrator/dop853mod.h
rename : integrator/eventFinding.c => PyDSTool/integrator/eventFinding.c
rename : integrator/eventFinding.h => PyDSTool/integrator/eventFinding.h
rename : integrator/events.h => PyDSTool/integrator/events.h
rename : integrator/integration.c => PyDSTool/integrator/integration.c
rename : integrator/integration.h => PyDSTool/integrator/integration.h
rename : integrator/interface.c => PyDSTool/integrator/interface.c
rename : integrator/interface.h => PyDSTool/integrator/interface.h
rename : integrator/lapack.f => PyDSTool/integrator/lapack.f
rename : integrator/lapackc.f => PyDSTool/integrator/lapackc.f
rename : integrator/maxmin.c => PyDSTool/integrator/maxmin.c
rename : integrator/maxmin.h => PyDSTool/integrator/maxmin.h
rename : integrator/memory.c => PyDSTool/integrator/memory.c
rename : integrator/memory.h => PyDSTool/integrator/memory.h
rename : integrator/radau5.f => PyDSTool/integrator/radau5.f
rename : integrator/radau5.h => PyDSTool/integrator/radau5.h
rename : integrator/radau5.i => PyDSTool/integrator/radau5.i
rename : integrator/radau5mod.c => PyDSTool/integrator/radau5mod.c
rename : integrator/radau5mod.h => PyDSTool/integrator/radau5mod.h
rename : integrator/radau5v.f => PyDSTool/integrator/radau5v.f
rename : integrator/signum.c => PyDSTool/integrator/signum.c
rename : integrator/signum.h => PyDSTool/integrator/signum.h
rename : integrator/vfield.h => PyDSTool/integrator/vfield.h
rename : matplotlib_import.py => PyDSTool/matplotlib_import.py
rename : parseUtils.py => PyDSTool/parseUtils.py
rename : scipy_ode.py => PyDSTool/scipy_ode.py
rename : tests/CIN.py => PyDSTool/tests/CIN.py
rename : tests/DAE_example.py => PyDSTool/tests/DAE_example.py
rename : tests/Dopri_backwards_test.py => PyDSTool/tests/Dopri_backwards_test.py
rename : tests/HH_DSSRTtest.py => PyDSTool/tests/HH_DSSRTtest.py
rename : tests/HH_adjointPRC.py => PyDSTool/tests/HH_adjointPRC.py
rename : tests/HH_loaded.py => PyDSTool/tests/HH_loaded.py
rename : tests/HH_loaded_Cintegrator.py => PyDSTool/tests/HH_loaded_Cintegrator.py
rename : tests/HH_model.py => PyDSTool/tests/HH_model.py
rename : tests/HH_model_Cintegrator.py => PyDSTool/tests/HH_model_Cintegrator.py
rename : tests/HH_model_Cintegrator_testbounds.py => PyDSTool/tests/HH_model_Cintegrator_testbounds.py
rename : tests/HH_model_testbounds.py => PyDSTool/tests/HH_model_testbounds.py
rename : tests/IF_delaynet.py => PyDSTool/tests/IF_delaynet.py
rename : tests/IF_delaynet_syn.py => PyDSTool/tests/IF_delaynet_syn.py
rename : tests/IF_model_test.py => PyDSTool/tests/IF_model_test.py
rename : tests/IF_squarespike_model.py => PyDSTool/tests/IF_squarespike_model.py
rename : tests/ML_adjointPRC.py => PyDSTool/tests/ML_adjointPRC.py
rename : tests/Makefile => PyDSTool/tests/Makefile
rename : tests/ModelSpec_test.py => PyDSTool/tests/ModelSpec_test.py
rename : tests/MultiCompartments.py => PyDSTool/tests/MultiCompartments.py
rename : tests/MultiCompartments2.py => PyDSTool/tests/MultiCompartments2.py
rename : tests/NineML_import_test.py => PyDSTool/tests/NineML_import_test.py
rename : tests/PointInfo_test.py => PyDSTool/tests/PointInfo_test.py
rename : tests/PyCont_ABCReaction.py => PyDSTool/tests/PyCont_ABCReaction.py
rename : tests/PyCont_ABReaction.py => PyDSTool/tests/PyCont_ABReaction.py
rename : tests/PyCont_Brusselator.py => PyDSTool/tests/PyCont_Brusselator.py
rename : tests/PyCont_Catalytic.py => PyDSTool/tests/PyCont_Catalytic.py
rename : tests/PyCont_Catalytic_demo.py => PyDSTool/tests/PyCont_Catalytic_demo.py
rename : tests/PyCont_DiscPredPrey.py => PyDSTool/tests/PyCont_DiscPredPrey.py
rename : tests/PyCont_Hamiltonian.py => PyDSTool/tests/PyCont_Hamiltonian.py
rename : tests/PyCont_HindmarshRose.py => PyDSTool/tests/PyCont_HindmarshRose.py
rename : tests/PyCont_Hopfield.py => PyDSTool/tests/PyCont_Hopfield.py
rename : tests/PyCont_LPNeuron.py => PyDSTool/tests/PyCont_LPNeuron.py
rename : tests/PyCont_LevelCurve.py => PyDSTool/tests/PyCont_LevelCurve.py
rename : tests/PyCont_Logistic.py => PyDSTool/tests/PyCont_Logistic.py
rename : tests/PyCont_Lorenz.py => PyDSTool/tests/PyCont_Lorenz.py
rename : tests/PyCont_MorrisLecar_TypeI.py => PyDSTool/tests/PyCont_MorrisLecar_TypeI.py
rename : tests/PyCont_MorrisLecar_TypeII.py => PyDSTool/tests/PyCont_MorrisLecar_TypeII.py
rename : tests/PyCont_NewLorenz.py => PyDSTool/tests/PyCont_NewLorenz.py
rename : tests/PyCont_PredPrey.py => PyDSTool/tests/PyCont_PredPrey.py
rename : tests/PyCont_SaddleNode.py => PyDSTool/tests/PyCont_SaddleNode.py
rename : tests/PyCont_hybrid_osc.py => PyDSTool/tests/PyCont_hybrid_osc.py
rename : tests/PyCont_vanDerPol.py => PyDSTool/tests/PyCont_vanDerPol.py
rename : tests/PySCes_import_test.py => PyDSTool/tests/PySCes_import_test.py
rename : tests/SLIP_2D.py => PyDSTool/tests/SLIP_2D.py
rename : tests/SLIP_2D_maps.py => PyDSTool/tests/SLIP_2D_maps.py
rename : tests/SLIP_2D_pdc.py => PyDSTool/tests/SLIP_2D_pdc.py
rename : tests/SLIP_plot.py => PyDSTool/tests/SLIP_plot.py
rename : tests/Symbolic_Diff_test.py => PyDSTool/tests/Symbolic_Diff_test.py
rename : tests/Symbolic_test.py => PyDSTool/tests/Symbolic_test.py
rename : tests/Tutorial_Calcium.py => PyDSTool/tests/Tutorial_Calcium.py
rename : tests/Tutorial_LorenzMap.py => PyDSTool/tests/Tutorial_LorenzMap.py
rename : tests/Tutorial_PredatorPrey.py => PyDSTool/tests/Tutorial_PredatorPrey.py
rename : tests/Tutorial_SymbolicJac.py => PyDSTool/tests/Tutorial_SymbolicJac.py
rename : tests/Tutorial_VdP.py => PyDSTool/tests/Tutorial_VdP.py
rename : tests/Tutorial_compneuro.py => PyDSTool/tests/Tutorial_compneuro.py
rename : tests/Tutorial_linear.py => PyDSTool/tests/Tutorial_linear.py
rename : tests/basic_gen_tests.py => PyDSTool/tests/basic_gen_tests.py
rename : tests/basic_gen_tests_C.py => PyDSTool/tests/basic_gen_tests_C.py
rename : tests/dopri_event_test.py => PyDSTool/tests/dopri_event_test.py
rename : tests/embedded_map_test.py => PyDSTool/tests/embedded_map_test.py
rename : tests/expfn_test.py => PyDSTool/tests/expfn_test.py
rename : tests/fingermodel_auxvartest.py => PyDSTool/tests/fingermodel_auxvartest.py
rename : tests/fingermodel_vode.py => PyDSTool/tests/fingermodel_vode.py
rename : tests/forced_spring.py => PyDSTool/tests/forced_spring.py
rename : tests/freefinger_noforce_radau.py => PyDSTool/tests/freefinger_noforce_radau.py
rename : tests/funcspec_tests.py => PyDSTool/tests/funcspec_tests.py
rename : tests/imp_load_test.py => PyDSTool/tests/imp_load_test.py
rename : tests/impfn_test.py => PyDSTool/tests/impfn_test.py
rename : tests/imprecise_event_test.py => PyDSTool/tests/imprecise_event_test.py
rename : tests/interp_dopri_test.py => PyDSTool/tests/interp_dopri_test.py
rename : tests/interp_piecewise_test.py => PyDSTool/tests/interp_piecewise_test.py
rename : tests/interp_vode_test.py => PyDSTool/tests/interp_vode_test.py
rename : tests/joe_pest.py => PyDSTool/tests/joe_pest.py
rename : tests/mapsystem_test.py => PyDSTool/tests/mapsystem_test.py
rename : tests/numeric_diff_test.py => PyDSTool/tests/numeric_diff_test.py
rename : tests/objectdelete_test.py => PyDSTool/tests/objectdelete_test.py
rename : tests/parvals.dat => PyDSTool/tests/parvals.dat
rename : tests/pest_test1.py => PyDSTool/tests/pest_test1.py
rename : tests/pest_test2.py => PyDSTool/tests/pest_test2.py
rename : tests/pest_test3.py => PyDSTool/tests/pest_test3.py
rename : tests/pest_test3_Cintegrator.py => PyDSTool/tests/pest_test3_Cintegrator.py
rename : tests/pest_test4_Cintegrator.py => PyDSTool/tests/pest_test4_Cintegrator.py
rename : tests/phaseplane_HHtest.py => PyDSTool/tests/phaseplane_HHtest.py
rename : tests/poly_interp_test.py => PyDSTool/tests/poly_interp_test.py
rename : tests/radau_event_test.py => PyDSTool/tests/radau_event_test.py
rename : tests/run_all_tests.py => PyDSTool/tests/run_all_tests.py
rename : tests/saveload_test.py => PyDSTool/tests/saveload_test.py
rename : tests/sloppycell_example.py => PyDSTool/tests/sloppycell_example.py
rename : tests/splinetest.py => PyDSTool/tests/splinetest.py
rename : tests/test_bd_containment.py => PyDSTool/tests/test_bd_containment.py
rename : tests/test_context_spikes.py => PyDSTool/tests/test_context_spikes.py
rename : tests/test_find_nearby_ball.py => PyDSTool/tests/test_find_nearby_ball.py
rename : tests/test_hybrid_extinputs.py => PyDSTool/tests/test_hybrid_extinputs.py
rename : tests/test_hybrid_extinputs_Cintegrator.py => PyDSTool/tests/test_hybrid_extinputs_Cintegrator.py
rename : tests/test_spikes.dat => PyDSTool/tests/test_spikes.dat
rename : tests/test_variable_traj.py => PyDSTool/tests/test_variable_traj.py
rename : tests/traj_gt0_test.py => PyDSTool/tests/traj_gt0_test.py
rename : tests/ttraj_prebotfast.dat => PyDSTool/tests/ttraj_prebotfast.dat
rename : tests/tvals.dat => PyDSTool/tests/tvals.dat
rename : tests/vanderPol.dat => PyDSTool/tests/vanderPol.dat
rename : tests/varvals.dat => PyDSTool/tests/varvals.dat
rename : tests/vode_event_test1.py => PyDSTool/tests/vode_event_test1.py
rename : tests/vode_event_test2.py => PyDSTool/tests/vode_event_test2.py
rename : tests/vode_withJac_test.py => PyDSTool/tests/vode_withJac_test.py
rename : tests/xtraj_prebotfast => PyDSTool/tests/xtraj_prebotfast
rename : tests/xtraj_prebotfast.dat => PyDSTool/tests/xtraj_prebotfast.dat
rename : utils.py => PyDSTool/utils.py
Import 'py.test' compatible tests
Merge pull request #6 from z2v/setup

Preparing for PyPI