Initial gotcloud version
Update scripts from Terry
Remove unused jar & binary files
Update tabix version
mapping pipeline - update the make command recommendation
Add runcluster.pl
Mapping Pipeline : Update to write each step to a log, but then remove the log on success.
Merge branch 'master' of wonderland.sph.umich.edu:/net/mario/git/gotcloud
Update Mapping Test Makefile expected results diff
Update UMAKE test makefile to ignore the path to bams
UMAKE - update to use numjobs
Added hard-coded chromosomes to UMAKE defaults conf file
Changed maxAB to maxABL as per Goo e-mail on 2012-09-04
Modified loadConf, moving shared codeblock to a new sub loadLine, added loadOverride and localdefaults
Merge branch 'master' of /net/mario/git/gotcloud
Changed default FILTER_MIN_SAMPLE_DP value from 0.5 to 1 in defaults.conf
Merge branch 'master' of /net/mario/git/gotcloud
Add source for umake.v1.0.1.20110706.tar.gz
Fix samtools-hybrid compile problem on some machines.
Remove old version of libStatGen