Merge pull request #176 from jaredbischof/master

Allowing awe_preprocess.pl to be run with no filtering options without enforcing any default filtering setting.
Merge pull request #177 from jaredbischof/master

More edits to script that will submit the remainder of the MG-RAST jobs that have run thru AWE and the MGRAST AWE pipeline template.
Merge pull request #178 from jaredbischof/master

Fix to allow upload to Shock of very large files by using option that se...
Merge pull request #179 from jaredbischof/master

Edited awe preprocessing wrapper so that if a file is submitted to the p...
Update mgrast-prod.awe.template
Merge pull request #180 from wtangiit/master

Update mgrast-prod.awe.template (make sure the max input of a blat workunit is under 50M)
Changed job_num to job_id for annotation stage of pipeline so that users outside of MG-RAST can input a job identifier that is not an integer.