Initial import
Initial import
Test commit
Added report for failed designs
Started implementation of HTML output
Fixed bugs in oligo input, primer3 parameter, targetgroup input, mummermapping. Added averaging over >19nt siRNAs.
Added input/output file organization
HTML output implemented. BUT: fix syntax error, add output HTML folder, GBrowse selection etc.
HTML bugs fixed
bugfixes after first testrun
some HTML improvements, missing: GBrowse add and right links to input files
some HTML improvements
Efficiency calculation updated for flexible siRNA length
Implemented unlink for files not required anymore
Updated HTML input file output
Annotation file output for GBrowse was added (already revision before), split option updated and implemented for additional off-target evaluations, too
Started implementation of pool summary for siRNA evaluation
Finished implementation of pool analysis for siRNA evaluation
Some updates on pool option, started implementation of small statistics on designs
Output of statistics summary finished