thesis: returning to putting the header in the top margin
P.D. corrections
thesis: increased the spacing in the ToC a bit, since we have more page space now
fonts: shrinked the diamond symbol a bit
P.D. corrections
figures/bell: added a script for cooperative states
TODO: removed remaining tasks
buildfigures: removed commenting
numerical: added references to our software
thesis: squished ToC a little to accommodate for a new section