Squashed commit of the following:

commit bfe8a09aca0f13c89618cdaf10af10551ee38046
Author: Travis Abbott <tabbott@genome.wustl.edu>
Date:   Fri Sep 27 15:31:56 2013 -0500

    new upstream version v1.0.11

commit 96d6e75eb96f45380abed4c7aee3f1c9268415c4
Author: apregier <aregier@genome.wustl.edu>
Date:   Tue Aug 6 15:45:42 2013 -0500

    Version 1.0.10
update version to v1.0.11