Added a missing test method for getFingerPrint()

Change-Id: I11404ad5a209bf1ee13a5561e0b87b341d3296dc

Signed-off-by: Rajarshi  Guha <rajarshi.guha@gmail.com>
updated entry for bpol to be in sync with other descriptors
Revert "Patched bpol descriptor with cheminf ID" (fixes #3541366)

This reverts commit a4db4a2a3dcbcf2b7454f5582ed62c7f4f154847.

The introduction will have to be repeated later, when the ontology bits are updated too, so that
tools can look up info on those descriptors.
Changed behaviour of has2DCoordinates to mirror has3DCoordinates

Two new methods were also introduced that allow determination of
whether the container has
all atoms with 2D/3D coordinates, some (partial) or none. These methods
replace the function of
has2DCoordinatesNew() which has been marked for deprecation.
GeometryToolsTest was also added to the standard test suite (MstandardTests)
Several unit tests for new GeometryTools functions

Change-Id: I92c84c106c3f2cec127786875c6185313521a3b5
Signed-off-by: Egon Willighagen <egonw@users.sourceforge.net>
Taking advantage of new has2DCoordinates behvaiour

Change-Id: Ic364aadbecff93e9085a9dc7cb82b1be4a1288a1
Signed-off-by: Egon Willighagen <egonw@users.sourceforge.net>
spelling

Change-Id: If89352bd30bb2e452ab39b6ade95a1520b35d088
Signed-off-by: Egon Willighagen <egonw@users.sourceforge.net>
Added @link's to documentation

Change-Id: I379d454f7fb9fb655c6b4320d8c2bd88c2ed2d0c
Signed-off-by: Egon Willighagen <egonw@users.sourceforge.net>
Added Test[Class|Method] annotation

Change-Id: Ic775354a26bcd17a6b69d509980c4e7de22f459a
Corrected method call in test

Change-Id: I013e6050d90778f56d61deb8ffbfac70b3647374
Signed-off-by: Egon Willighagen <egonw@users.sourceforge.net>
Fixed the same problem as in DefaultChemObjectBuilder (see commit 3d0b0e5f329e9256638ce18e4b5024e2d348474a and 2a2aecc077add716309591e2fae9832dfcfc64cf)

Change-Id: I2c2e7ae356a62fda6dd3001693267bcf988aadec
Signed-off-by: ngn <jeliazkova.nina@gmail.com>
Modify to make UniversalIsomorphismTester usable in a threaded environment. Remove keyword static from variables start and timeout. Remove keyword static from methods isIsomorph, getIsomorphMap, getIsomorphAtomsMap, getIsomorphMaps, getSubgraphMaps, getSubgraphMap, getSubgraphAtomsMaps, getSubgraphAtomsMap, isSubgraph, getOverlaps, search, getMaximum, setTimeout. Added constructor.
Make it compatible with the new UniversalIsomorphismTester.
Make it compatible with the new UniversalIsomorphismTester.
Make it compatible with the new UniversalIsomorphismTester.
Make it compatible with the new UniversalIsomorphismTester.
Make it compatible with the new UniversalIsomorphismTester.
Make it compatible with the new UniversalIsomorphismTester.
Make it compatible with the new UniversalIsomorphismTester.
Make it compatible with the new UniversalIsomorphismTester.
Make it compatible with the new UniversalIsomorphismTester.