Initial commit for changes required for adding analysis results back to given isatab model.
Merge branch 'merge_results_isatab' of github.com:parklab/Refinery into merge_result_isatab
Initial implementation of Galaxy workflow graph.
Fine tuned layout of graph.
Merge branch 'merge_result_isatab' into merge_results_isatab
Attempt at including the specified node_uuid to input tools.
Created AnalysisNodeConnection to keep track of incoming and outgoing connections between nodes and the steps in the expanded workflow of an analysis.
Saving AnalysisNodeConnections.
Now creating AnalysisNodeConnections for output nodes. Updated model.
Initial implementation of attaching workflow outputs to data set and re-indexing data set.
Extended AnalayisNodeConnection model with filename (replaces "name" and "name" will be used as "display name"), subanalysis (to group input and output files associated same copy of the workflow template) and added "unique_together" flags to ensure unique names for workflow outputs
[#46423355] Update to allow galaxy workflows to read in refinery_files tag to allow users to define new names and descriptions of desired output files.
Extended Node and AnnotatedNode models and indexing with additional fields to keep track of which nodes are generated by which analysis/subanalysis and which tool outputs they correspond to. Added new methods for creating and indexing annotated node objects.
Merge branch 'merge_results_isatab' of github.com:parklab/Refinery into merge_results_isatab
Connecting and correct reindexing of analysis results *before analysis*. Updated Solr schema.
[#46423355] Add analysis node connections to zipping workflow
[#46423355] Fix attach_outputs_dataset function for adding workflow outputs to back to the data_set graph
Temporary moving attach_outputs_dataset back into preprocessing step.
[#Fixes 40823075]  Analysis, subanalysis and output type accessible a special facets (but not integrated into UI). Added "tabular" file type. Results now being stored and connected to output files. Better error handling in monitoring of analyses.
Merge branch 'merge_results_isatab' into develop