Initial commit
 Initial commit


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	modified:   denovogear-code/README.txt
	modified:   denovogear-code/README.txt


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modified readme
modified readme


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Added BCF Parser and INDEL DNM Detection


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Added BCF Parser and INDEL DNM Detection


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cleanup


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cleanup


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output ALT, updated README


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output ALT, updated README


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Merge branch 'master' of ssh://git.code.sf.net/p/denovogear/code


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Merge branch 'master' of ssh://git.code.sf.net/p/denovogear/code


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variable mu based on indel lengths, internal lookup table generation, modified lookup table,  cmd line parameters


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variable mu based on indel lengths, internal lookup table generation, modified lookup table,  cmd line parameters


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