Merge pull request #11 from mauriceling/master

address missing deadline or pyreadline in windows
Merge pull request #12 from mauriceling/master

1. brief description for examples 01 to 05. 2. py, pyshell commands in DOSE shell
Added *.csv and project files to ignore list
Modified reporting function to print organism identity, chromosome and parents
Implemented main analytical functions for simulation analysis
Examples of analyzing hamming's distance inside an eco_cell
Merge branch 'master' of https://github.com/clarencecastillo/dose

# By Clarence Castillo
# Via clarencecastillo (2) and Clarence Castillo (1)
* 'master' of https://github.com/clarencecastillo/dose:
  Examples of analyzing hamming's distance inside an eco_cell
  Implemented main analytical functions for simulation analysis
  Modified reporting function to print organism identity, chromosome and parents
  Added *.csv and project files to ignore list