Release log update
Encode release log update
fixing a bug due to a global variable, just checking track name for table version now, rm #12308
Thanks Jonathan for noticing I forgot to mention that by 'Variant Identifiers' we mean 'dbSNP rs# ids' for now... refs #11460
In MLQ #12327, user reported that BAM track colored by tag was turning
blue as we zoomed out, even though most items are red.  Unbeknownst to
me, if a linkedFeatures track has non-NULL colorShades, items are sorted
by their color, and in this case it favored blue over other colors.
Only the gray-scale coloring modes need colorShades.  So don't add colorShades
unless the coloring mode is gray-scale.  refs #12327
fixes #12337. better way to allow colons in urls by splitting htmlExpandUrl into two functions. the new one is called expandUrlOnBase and includes ftp support as well as http(s).
Merge branch 'master' of hgwdev.cse.ucsc.edu:/data/git/kent
allow parsing of settings file from lastz_D tuning operations refs #12260
Merging in bigWigCat shared branch with --squash. This is Daniel Zerbino's work.
record procedures from v74 update refs #12288
restore fetch of GTF and MySQL files refs #12288
Combined some mostly redundant sections of the Problem/Solution section. Lightly edited a few other sections. Fixed formatting problems in both files.
Added Raney et al. reference.
Release log update
Encode release log update
Merge remote-tracking branch: upstream/master