autogen: Remove
Add autogen as a submodule
specification: Remove
Add specification as a submodule
xsd-fu: Remove
Add xsd-fu as a submodule
ome-io: Remove
Add ome-io as a submodule
ome-plugins: Remove
ome-tools: Remove
Add ome-tools as a submodule
ome-xml: Remove
Add ome-xml as a git submodule
stubs: Remove
Add stubs as a submodule
test-suite: Remove
Add test-suite as a submodule