Speed up benchmark by considering fewer transforms.


git-svn-id: https://svn.salilab.org/imp/trunk@17186 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Ensure number of rigid bodies is consistent with the number of particles.


git-svn-id: https://svn.salilab.org/imp/trunk@17187 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Set timeouts for benchmarks.


git-svn-id: https://svn.salilab.org/imp/trunk@17188 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Make sure that python is propagated.


git-svn-id: https://svn.salilab.org/imp/trunk@17189 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Mark Python-only classes as such.


git-svn-id: https://svn.salilab.org/imp/trunk@17191 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Run for less time in fast mode.


git-svn-id: https://svn.salilab.org/imp/trunk@17192 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Documentation cleanups.


git-svn-id: https://svn.salilab.org/imp/trunk@17193 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Flesh out description from the PDF manual.


git-svn-id: https://svn.salilab.org/imp/trunk@17194 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Fix em2d max score.


git-svn-id: https://svn.salilab.org/imp/trunk@17195 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Remove duplicate files.


git-svn-id: https://svn.salilab.org/imp/trunk@17196 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Put databases in more appropriate locations.


git-svn-id: https://svn.salilab.org/imp/trunk@17197 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Handle 'cp -r'.


git-svn-id: https://svn.salilab.org/imp/trunk@17198 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Accept '-h' for help too.


git-svn-id: https://svn.salilab.org/imp/trunk@17199 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
sync RMF to 84d72c6c6a3d246270166a03b48eff9a2a2b3417