some modifications for pruning in jadetree
pruning of input datasets
minor speed changed
bitsets
more speed
minor changes
synthesis subtree extraction first pass
synthesis subtree extraction first pass
Merge branch 'master' of https://github.com/OpenTreeOfLife/treemachine
pruning changes
testing edits
logging the IDs of the root and the metadata node for the initax command so that they can be reliably used in the addtaxonomymetadatanodetoindex command
small changes
add nexson2newick
added a boolean verbose arg to nexsonReader. default on
adding service for getting the draft tree information
fixing shutdown method so it works for embedded and service dbs
dealing with Integer and Long types it writeIntegerPropertyIfFound
fixed some synthesis stuff
missing file