Updated AFQ to use ANTS for normalization and to xform template rois to native space
small changes
Merge branch 'master' into ants

Conflicts:
	functions/AFQ_AddNewFiberGroup.m
Merge branch 'master' into ants
added the subject number to saved iterations
changed naming of output files
fixed AFQ_run_sge so that it will properly combine all the grid runs
added new functions
separated steps so that they do not get repeated if theyre already done (eg cleaning)
finished writing the function to combine different afq runs
now afq will properly submit and combine jobs from sun grid engine
added the temporall CC fiber group and updated the ROIs with MBS
fixed name of temporal CC rois
now each fiber is flipped so it passes through roi 1 before roi2
now all segmented fiber groups are reoriented so that each fiber passes through roi1 before roi2. This is important for calculating stats along the whole tract length
Merge branches 'ants' and 'ants' of https://github.com/jyeatman/AFQ into ants
additional support for running AFQ on a compute cluster
added new callosal template
fixed the fiber group segmentation proceedure for ants normalization
pudated cortical surface visualization to work for visualizing multiple fiber group endpoints