Did significant refactoring on most sections. Also sped up analysis by roughly 3-fold.
Merge pull request #8 from rybern/refactoring

Did significant refactoring on most sections.
Added testing functionality. Parallelized problem data setup process.
Changed script file parameter description of n_trials.
Merge pull request #9 from rybern/refactoring

Refactoring
Update example command in README.md
Rename command_line_script.py to fresco.py
Update README.md to reference new script name
Fix feature vector output

Fixes #10.
Add --output_dir option

Removed --prediction_testing_output and --feature_vector_output. Fixes #5.
Merge pull request #11 from jrrideout/misc-fixes

Misc. changes
Added a 'stitch_avg_outcome' function, which builds an average outcome from a list of masks used in cross validation. Added this function for writing the feature scores of test results.
Fixed bug where outcome returned by stitch_avg_outcome had summed prediction quality instead of average prediction quality.
Merge pull request #13 from rybern/refactoring

Added a 'stitch_avg_outcome' function, which builds an average outcome f...
Add basic logging

info.log will be created in the output directory. Currently is contains some basic info, including the start, stop, and elapsed time (in seconds) that fresco took to run.
Add batch job submission script

Very messy right now and specific to job submission on Minerva.
Merge pull request #18 from jrrideout/issue-16

Add basic logging
Fix a couple of bugs
Add job submission status output
Move old stuff into old-results folder