transition commit
antechamber merge
merge devel
restoring hydrogens.go
restoring part_test.go
fixed a bug in writePDBLine, files.go
some debugging, there seem to be problems in the JSONInfo.Marshal function
transition commit, json transmitting back to python is not working, the issue seems to be here. There are several bug-hunting print statements in json.go that need to go after this is fixed
The gochem part of gopymol seems to be working fine, but there is still much to check
small fixes and additions for goopt
small bugfix for a problem with the TM define script